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[179596_at]

Description C14A6.3 /REP_DB=WormBase Gene ID /WP=CE18495 /TR=Q9XVE2 /GB=CAB03880.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 0.9
(-3)
A 		12.6
(3)
A 		4.8
(-1)
A 		4
(-1.4)
A 		12
B 15.1
(-0.7)
A 		32.2
(2.8)
A 		33.4
(3)
A 		3.5
(-3)
A 		30
C 4.6
(-2.1)
A 		25.6
(2.9)
A 		0.8
(-3)
A 		25.9
(3)
A 		25
avr 6.9
(-3) 		23.5
(3) 		13
(-0.8) 		11.1
(-1.5) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 5.5
(-3)
A 		7.1
(-2.7)
A 		25
(0.1)
A 		42.8
(3)
A 		8.4
(-2.5)
A 		9.8
(-2.3)
A 		37
B 3.2
(-3)
A 		14.3
(3)
A 		6.7
(-1.1)
A 		7.6
(-0.6)
A 		9.2
(0.2)
A 		8.2
(-0.3)
A 		11
C 3
(-2.8)
A 		6.7
(-2.3)
A 		7.4
(-2.2)
A 		46.3
(3)
A 		1.4
(-3)
A 		25.5
(0.2)
A 		45
avr 3.9
(-3) 		9.4
(-1.8) 		13
(-1.1) 		32.2
(3) 		6.3
(-2.5) 		14.5
(-0.8) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.3
(-3)
A 		2.7
(3)
A 		1.2
(-0.8)
A 		0.6
(-2.3)
A 		2
B 4.8
(0.4)
A 		8
(3)
A 		7.7
(2.8)
A 		0.7
(-3)
A 		7
C 1.5
(-2)
A 		7.3
(3)
A 		0.3
(-3)
A 		4.4
(0.5)
A 		7
avr 2.2
(-2.6) 		6
(3) 		3.1
(-1.2) 		1.9
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1
(-3)
A 		2.5
(-2.1)
A 		5.5
(-0.2)
A 		10.8
(3)
A 		2.5
(-2.1)
A 		2.4
(-2.1)
A 		10
B 1.1
(-3)
A 		4.8
(3)
A 		1.6
(-2.2)
A 		2
(-1.5)
A 		3.7
(1.2)
A 		3.1
(0.2)
A 		4
C 1.1
(-2.5)
A 		2.1
(-1.9)
A 		1.9
(-2)
A 		9.3
(3)
A 		0.4
(-3)
A 		8.5
(2.5)
A 		9
avr 1.1
(-3) 		3.1
(-1.1) 		3
(-1.2) 		7.4
(3) 		2.2
(-2) 		4.7
(0.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179596_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12764
Sequence Type Exemplar sequence
Representative Public ID C14A6.3 NCBI
Target Description C14A6.3 /REP_DB=WormBase Gene ID /WP=CE18495 /TR=Q9XVE2 /GB=CAB03880.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075143(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075143 NCBI Caenorhabditis elegans C14A6.3 (C14A6.3) mRNA, complete cds. 11/11 None
SNAP00000009391 ENSEMBL cdna:SNAP chromosome:CEL140:V:18149643:18151323:1 11/11 None
GENEFINDER00000009406 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18149580:18153520:1 11/11 None
C14A6.3 ENSEMBL cdna:known chromosome:CEL140:V:18148973:18151323:1 gene:C14A6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18148972-18151323(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14A6.3
Entrez Gene 182584 Entrez gene
SwissProt Q9XVE2 EMBL-EBI
WormBase CE18495 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03880 Hypothetical protein C14A6.3 [Caenorhabditis elegans] ref|NP_507544.1| C14A6.3 [Caenorhabditis elegans] 0.0
blast CAB03880 Hypothetical protein C14A6.3 [Caenorhabditis elegans] ref|NP_507544.1| C14A6.3 [Caenorhabditis elegans] 1.0E-150
blast CAB03880 Hypothetical protein C14A6.3 [Caenorhabditis elegans] ref|NP_507544.1| C14A6.3 [Caenorhabditis elegans] 1.0E-147
blast CAB03882 Hypothetical protein C14A6.2 [Caenorhabditis elegans] ref|NP_507545.2| C14A6.2 [Caenorhabditis elegans] 1.0E-71
blast CAB05257 Hypothetical protein M162.5 [Caenorhabditis elegans] ref|NP_507831.1| M162.5 [Caenorhabditis elegans] 8.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.7E-14
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.7E-14
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.7E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507544.1 1 7-29
C14A6.3 1 7-29
GENEFINDER00000009406 3 526-548,606-628,640-659
Sequence
Target Sequence 
>C. ELEGANS:179596_AT
tcaagcctttggaatctcatttgatgaatacgggaaaagtgatggaaacgtggtcgaatg
agcatttattgatagtatccaatgcaattcagaaatacgatccacttgttactcagctac
cgattgattcgattaattccattgaaaagattacattgtgttgcaattcaattccggaaa
tcactgtgaatcttacaagtatcctggaactccgtgatatcgcatcagatacggataaat
tgtttgttttgctcaaaaccaattcgattcaacttttaaatatgttgagtaatgcaacga
ttcaaggattctatgaggaaatcattggaattatcaatccagaagatatgaaggacattg
accaagcgaggaaagtggctgaggaaatattaaagtatccaaattatcaagaattaattc
agttcaacgatgtcgtatataataagttaagcgcactctacttttcaacctaccaatcga
cagcaactaaatcagttgtcgtgttgggagaaatcaagaataatgcggacttgagacaat
tcgtgaatgtgattagttgcttggtacagagtcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGCCTTTGGAATCTCATTTGAT 446 631 596 Antisense
GGAAACGTGGTCGAATGAGCATTTA 693 525 639 Antisense
AATACGATCCACTTGTTACTCAGCT 673 171 689 Antisense
GTTACTCAGCTACCGATTGATTCGA 599 445 703 Antisense
GTTGCAATTCAATTCCGGAAATCAC 639 437 755 Antisense
GAATCTTACAAGTATCCTGGAACTC 252 329 783 Antisense
TCCTGGAACTCCGTGATATCGCATC 218 595 797 Antisense
GTTAAGCGCACTCTACTTTTCAACC 254 445 1041 Antisense
TTCAACCTACCAATCGACAGCAACT 6 687 1059 Antisense
ACTAAATCAGTTGTCGTGTTGGGAG 592 99 1081 Antisense
GATTAGTTGCTTGGTACAGAGTCGC 226 429 1146 Antisense
Sequence Source Affymetrix Proprietary Database