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[179594_s_at]

Description F31E9.6 /REP_DB=WormBase Gene ID /WP=CE23695 /TR=Q9TW96 /GB=CAB54474.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 30      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 69.7
(1)
A 		83.1
(3)
A 		45
(-2.6)
A 		42.6
(-3)
A 		41
B 94.6
(3)
A 		12.2
(-3)
A 		30.6
(-1.7)
A 		79.3
(1.9)
A 		82
C 103
(3)
A 		43.4
(-1.7)
A 		26.8
(-3)
A 		81.2
(1.3)
A 		76
avr 89.1
(3) 		46.2
(-1.7) 		34.1
(-3) 		67.7
(0.7) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 87.8
(-0.8)
A 		82.7
(-2)
A 		103.8
(3)
P 		99.9
(2.1)
M 		103.7
(3)
A 		78.5
(-3)
A 		25
B 75.6
(-1.9)
A 		112.1
(3)
A 		89
(-0.1)
A 		82
(-1.1)
A 		83.4
(-0.9)
A 		67.7
(-3)
A 		44
C 54.1
(-3)
A 		97.2
(1.6)
A 		66.8
(-1.6)
A 		73.7
(-0.9)
A 		96.9
(1.6)
A 		110
(3)
A 		56
avr 72.5
(-3) 		97.3
(3) 		86.5
(0.4) 		85.2
(0.1) 		94.7
(2.4) 		85.4
(0.1) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 25.4
(3)
A 		18
(0.7)
A 		11.8
(-1.3)
A 		6.2
(-3)
A 		19
B 30.2
(3)
A 		3
(-3)
A 		7.1
(-2.1)
A 		16.9
(0.1)
A 		27
C 34.1
(3)
A 		12.5
(-2.2)
A 		9.4
(-3)
A 		13.7
(-2)
A 		25
avr 29.9
(3) 		11.2
(-2.5) 		9.4
(-3) 		12.3
(-2.2) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 16.2
(-3)
A 		29.4
(2.2)
A 		22.6
(-0.5)
P 		25.3
(0.6)
M 		31.3
(3)
A 		19.1
(-1.8)
A 		15
B 26.3
(-1.2)
A 		37.3
(3)
A 		21.6
(-3)
A 		21.7
(-3)
A 		33.9
(1.7)
A 		25.2
(-1.6)
A 		16
C 20.1
(-1.6)
A 		29.6
(1)
A 		17
(-2.4)
A 		14.8
(-3)
A 		31.4
(1.5)
A 		36.8
(3)
A 		22
avr 20.9
(-2.7) 		32.1
(2.9) 		20.4
(-3) 		20.6
(-2.9) 		32.2
(3) 		27
(0.4) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179594_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13462
Sequence Type Exemplar sequence
Representative Public ID F31E9.6 NCBI
Target Description F31E9.6 /REP_DB=WormBase Gene ID /WP=CE23695 /TR=Q9TW96 /GB=CAB54474.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074981(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074981 NCBI Caenorhabditis elegans F31E9.6 (F31E9.6) mRNA, complete cds. 11/11 None
F31E9.6 ENSEMBL cdna:known chromosome:CEL140:V:17316203:17317702:-1 gene:F31E9.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027112 4/11 Cross Hyb Matching Probes None
GENEFINDER00000027120 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17316294-17317689(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F31E9.6
Entrez Gene 180145 Entrez gene
SwissProt Q9TW96 EMBL-EBI
WormBase CE23695 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54232 Hypothetical protein F31E9.6 [Caenorhabditis elegans] emb|CAB54474.2| Hypothetical protein F31E9.6 [Caenorhabditis elegans] ref|NP_507382.1| F31E9.6 [Caenorhabditis elegans] 1.0E-171
blast CAB03903 Hypothetical protein C18D4.6a [Caenorhabditis elegans] ref|NP_507442.2| C18D4.6a [Caenorhabditis elegans] 1.0E-155
blast CAH04697 Hypothetical protein C18D4.6c [Caenorhabditis elegans] ref|NP_001023668.1| C18D4.6c [Caenorhabditis elegans] 1.0E-149
Sequence
Target Sequence 
>C. ELEGANS:179594_S_AT
gatgctcaacggctggagcttctaagcgatgaatctgtttggcgactggaagcttatgag
gcgtttgccgacgctgaatacacaccgactttggagaaaatccggttgggtgtgattgga
ggaccaatagattcgattgatccgaattggccactaagaaaaattgctccagaacgcttc
ttgaatgatcgatgggctcgggctattcacgatcccagacggatacgacgaaagatcatt
ggacaccgtctaccatacagaatgaaatccgaacaaggtgtgccttacggaattcctaaa
caagctagactcgctgctcgtgaaaattctggtccagttcgagccccagcgatccttgga
ggtgctcacccgggacgatttcgagctggaggcccaacgggtgtcggagttgttagtaga
catactagacaatctggagcagctagaggtgttcttagaggaccaaatggaaatagagtt
gttcctctattccctgtacaaattcgagcaagaccccctgcacctacccgaacaatcatt
cctag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCTCAACGGCTGGAGCTTCTAA 79 413 286 Antisense
GCGATGAATCTGTTTGGCGACTGGA 649 289 311 Antisense
CGTTTGCCGACGCTGAATACACACC 15 247 347 Antisense
GCTGAATACACACCGACTTTGGAGA 619 295 358 Antisense
AAAATTGCTCCAGAACGCTTCTTGA 119 133 445 Antisense
ACGCTTCTTGAATGATCGATGGGCT 46 93 459 Antisense
TGATCGATGGGCTCGGGCTATTCAC 81 565 471 Antisense
AATCCGAACAAGGTGTGCCTTACGG 105 163 551 Antisense
TGCTCACCCGGGACGATTTCGAGCT 655 579 648 Antisense
GGGACGATTTCGAGCTGGAGGCCCA 535 493 657 Antisense
CACCTACCCGAACAATCATTCCTAG 416 139 806 Antisense
Sequence Source Affymetrix Proprietary Database