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[179593_at]

Description F09C6.3 /REP_DB=WormBase Gene ID /WP=CE18581 /TR=O45330 /GB=CAB04421.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 33.8
(-0.5)
P 		30.5
(-0.8)
A 		4.7
(-3)
A 		75
(3)
A 		70
B 53.8
(3)
P 		5.7
(-3)
A 		25.2
(-0.6)
A 		51.2
(2.7)
M 		48
C 59.1
(1.8)
P 		36.8
(-0.3)
A 		7
(-3)
A 		72.1
(3)
P 		65
avr 48.9
(1.1) 		24.3
(-1.7) 		12.3
(-3) 		66.1
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 45.5
(0.9)
A 		53.3
(3)
P 		40.5
(-0.5)
P 		52.3
(2.7)
P 		46.5
(1.1)
P 		31.3
(-3)
A 		22
B 39.4
(-0.8)
P 		27.5
(-2.3)
M 		45.4
(-0)
P 		69.5
(3)
P 		53.3
(1)
P 		21.5
(-3)
A 		48
C 64
(3)
P 		62.4
(2.8)
P 		59.9
(2.5)
P 		10.2
(-3)
A 		54.5
(1.9)
P 		20.8
(-1.8)
A 		54
avr 49.6
(2.6) 		47.7
(2.2) 		48.6
(2.4) 		44
(1.3) 		51.4
(3) 		24.5
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 12.3
(3)
P 		6.6
(-0.1)
A 		1.2
(-3)
A 		11
(2.3)
A 		11
B 17.1
(3)
P 		1.4
(-3)
A 		5.8
(-1.3)
A 		10.9
(0.6)
M 		16
C 19.5
(3)
P 		10.6
(-0.1)
A 		2.4
(-3)
A 		12.2
(0.4)
P 		17
avr 16.3
(3) 		6.2
(-1.6) 		3.1
(-3) 		11.4
(0.8) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 8.4
(-2.6)
A 		18.9
(3)
P 		8.8
(-2.4)
P 		13.3
(0)
P 		14
(0.4)
P 		7.6
(-3)
A 		11
B 13.7
(-0.5)
P 		9.1
(-2.5)
M 		11
(-1.7)
P 		18.4
(1.6)
P 		21.6
(3)
P 		8
(-3)
A 		14
C 23.7
(3)
P 		19
(1.7)
P 		15.3
(0.7)
P 		2.1
(-3)
A 		17.6
(1.3)
P 		7
(-1.6)
A 		22
avr 15.3
(1.6) 		15.7
(1.8) 		11.7
(-0.5) 		11.3
(-0.8) 		17.7
(3) 		7.5
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179593_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13768
Sequence Type Exemplar sequence
Representative Public ID F09C6.3 NCBI
Target Description F09C6.3 /REP_DB=WormBase Gene ID /WP=CE18581 /TR=O45330 /GB=CAB04421.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074864(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074864 NCBI Caenorhabditis elegans F09C6.3 (F09C6.3) mRNA, complete cds. 11/11 None
SNAP00000006337 ENSEMBL cdna:SNAP chromosome:CEL140:V:16881827:16882734:-1 9/11 None
GENEFINDER00000006359 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16881803:16882734:-1 9/11 None
F09C6.3 ENSEMBL cdna:known chromosome:CEL140:V:16881417:16882734:-1 gene:F09C6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16881416-16882734(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09C6.3
Entrez Gene 184232 Entrez gene
SwissProt O45330 EMBL-EBI
WormBase CE18581 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04074 Hypothetical protein F09C6.3 [Caenorhabditis elegans] emb|CAB04421.1| Hypothetical protein F09C6.3 [Caenorhabditis elegans] ref|NP_507265.1| F09C6.3 [Caenorhabditis elegans] 1.0E-128
blast CAB04074 Hypothetical protein F09C6.3 [Caenorhabditis elegans] emb|CAB04421.1| Hypothetical protein F09C6.3 [Caenorhabditis elegans] ref|NP_507265.1| F09C6.3 [Caenorhabditis elegans] 5.0E-92
blast CAB04074 Hypothetical protein F09C6.3 [Caenorhabditis elegans] emb|CAB04421.1| Hypothetical protein F09C6.3 [Caenorhabditis elegans] ref|NP_507265.1| F09C6.3 [Caenorhabditis elegans] 1.0E-91
Sequence
Target Sequence 
>C. ELEGANS:179593_AT
ccaggtggcaatagttcccggattgagaatgtttatacgtctagatccgaaccacgtgga
aatccatctgtgcatttcagctatgattcaaagactactatcaattccaacaatacaact
attgacaacaagcgtcagaggacgacacagcattttccgacatcaaatccttctgatcga
tcaactacctttggagccaatccattctcagatgttaacagtgatataaagcacgagagt
tcagaagcaaatgacgcatttgaaagtcataaaaagcggaacaacagggaaagaccaagt
ccgcactcatcatctgatggccgagagcaaagatcatcaggaggatttttccgttttaaa
gaaacaaatactataaattcaaacaacgtcattattgatagtagacaatttgaaaataat
cgaaaatacagtaatcaacaggtgatcagcgttgagaagagatctgaagccgatcgtcaa
catattgccagactggatgaaatgttggctgaacaaagaaaacaacaagatgcgcagaat
gctatacttgacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGGTGGCAATAGTTCCCGGATTG 105 271 115 Antisense
GTTTATACGTCTAGATCCGAACCAC 21 447 145 Antisense
AAATCCATCTGTGCATTTCAGCTAT 241 119 174 Antisense
CAAAGACTACTATCAATTCCAACAA 337 191 203 Antisense
GGACGACACAGCATTTTCCGACATC 705 517 254 Antisense
TCCGACATCAAATCCTTCTGATCGA 306 595 270 Antisense
GATCGATCAACTACCTTTGGAGCCA 659 417 289 Antisense
GGAGCCAATCCATTCTCAGATGTTA 288 521 307 Antisense
CAGGGAAAGACCAAGTCCGCACTCA 245 207 399 Antisense
GAAGCCGATCGTCAACATATTGCCA 77 345 580 Antisense
TGCGCAGAATGCTATACTTGACAAA 87 585 645 Antisense
Sequence Source Affymetrix Proprietary Database