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[179592_at]

Description B0391.3 /REP_DB=WormBase Gene ID /WP=CE17332 /TR=O62016 /GB=CAB03803.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 59.9
(-1.5)
A 		50.9
(-1.8)
A 		16.2
(-3)
A 		187.5
(3)
P 		171
B 62.7
(-2.2)
A 		106.9
(2)
A 		54.6
(-3)
A 		117
(3)
P 		62
C 50.3
(-2.6)
A 		85.4
(-0.8)
A 		42.2
(-3)
A 		158.1
(3)
P 		116
avr 57.6
(-2) 		81.1
(-0.8) 		37.7
(-3) 		154.2
(3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 63.6
(1.3)
A 		29.7
(-1.3)
A 		85.7
(3)
A 		32.7
(-1)
A 		69.8
(1.8)
A 		7
(-3)
A 		79
B 67.1
(2.6)
A 		44
(-0.5)
A 		24.9
(-3)
A 		40.1
(-1)
A 		70.4
(3)
A 		32.5
(-2)
A 		46
C 59.5
(0.7)
A 		90.2
(3)
A 		69.6
(1.5)
A 		9.6
(-2.9)
A 		8.4
(-3)
A 		28.2
(-1.5)
A 		82
avr 63.4
(3) 		54.6
(1.7) 		60.1
(2.5) 		27.5
(-2.3) 		49.5
(1) 		22.6
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 21.8
(1.6)
A 		11
(-1.2)
A 		4.2
(-3)
A 		27.4
(3)
P 		23
B 20
(0.2)
A 		26.4
(3)
A 		12.6
(-3)
A 		24.9
(2.3)
P 		14
C 16.6
(-2.1)
A 		24.6
(2)
A 		14.7
(-3)
A 		26.7
(3)
P 		12
avr 19.5
(0.4) 		20.7
(0.9) 		10.5
(-3) 		26.3
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 11.7
(0.1)
A 		10.6
(-0.2)
A 		18.7
(2.3)
A 		8.3
(-1)
A 		21.1
(3)
A 		1.7
(-3)
A 		19
B 23.4
(1.6)
A 		14.7
(-0.7)
A 		6.1
(-3)
A 		10.6
(-1.8)
A 		28.6
(3)
A 		12.1
(-1.4)
A 		23
C 22.1
(1.7)
A 		27.5
(3)
A 		17.7
(0.7)
A 		1.9
(-3)
A 		2.7
(-2.8)
A 		9.4
(-1.2)
A 		26
avr 19.1
(3) 		17.6
(2.3) 		14.2
(0.6) 		6.9
(-3) 		17.5
(2.2) 		7.7
(-2.6) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179592_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13392
Sequence Type Exemplar sequence
Representative Public ID B0391.3 NCBI
Target Description B0391.3 /REP_DB=WormBase Gene ID /WP=CE17332 /TR=O62016 /GB=CAB03803.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074482(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074482 NCBI Caenorhabditis elegans B0391.3 (B0391.3) mRNA, complete cds. 11/11 None
B0391.3 ENSEMBL cdna:known chromosome:CEL140:V:15617521:15620195:-1 gene:B0391.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015405 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15617520-15620195(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0391.3
Entrez Gene 181948 Entrez gene
SwissProt O62016 EMBL-EBI
WormBase CE17332 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03803 Hypothetical protein B0391.3 [Caenorhabditis elegans] ref|NP_506883.1| B0391.3 [Caenorhabditis elegans] 1.0E-176
blast CAB04143 Hypothetical protein F20E11.4 [Caenorhabditis elegans] ref|NP_507418.1| Seven TM Receptor family member (str-200) [Caenorhabditis elegans] 1.0E-102
blast CAB04642 Hypothetical protein R10E8.5 [Caenorhabditis elegans] ref|NP_507571.1| R10E8.5 [Caenorhabditis elegans] 4.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.4E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506883.1 7 10-29,42-61,66-88,109-131,178-200,227-249,269-291
B0391.3 7 10-29,42-61,66-88,109-131,178-200,227-249,269-291
Sequence
Target Sequence 
>C. ELEGANS:179592_AT
cgttgcgtattatttctggcctgttgatgaggacagggtttcctatcccgatgccatgtc
ctttatgggtgttgccataatgtttctgattgtcggttcttcatttgttgcggttgttta
ttttggaatcaaatgctatcagtatatatcacagcaacttggaaatgtatccgcacagtc
acaggcaaccaagactatgcaagttcaacttttctactctctaatcattcaatccgtgat
tccttctttcttaatgtatttgcctgctggtattgtgttttcaattcctattctttttcc
tattcttaatctgggttatgatgtgaaattttcgtttatttcctacaccattgcaatcta
cccagcaattgacccacttccaaccattttgatgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTGCGTATTATTTCTGGCCTGTT 662 247 483 Antisense
TGAGGACAGGGTTTCCTATCCCGAT 514 553 510 Antisense
TCCCGATGCCATGTCCTTTATGGGT 588 597 528 Antisense
GATTGTCGGTTCTTCATTTGTTGCG 378 435 570 Antisense
TCCGCACAGTCACAGGCAACCAAGA 574 595 652 Antisense
CAACTTTTCTACTCTCTAATCATTC 378 187 688 Antisense
CATTCAATCCGTGATTCCTTCTTTC 674 213 708 Antisense
TTTGCCTGCTGGTATTGTGTTTTCA 386 669 741 Antisense
TCCTATTCTTTTTCCTATTCTTAAT 551 591 768 Antisense
GTTTATTTCCTACACCATTGCAATC 46 449 816 Antisense
ACCCACTTCCAACCATTTTGATGAT 362 91 854 Antisense
Sequence Source Affymetrix Proprietary Database