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[179591_at]

Description W02A2.2 /REP_DB=WormBase Gene ID /WP=CE21232 /TR=Q9XUB7 /GB=CAB05305.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 63      6grp_total > 73      4grp_total > 13      6grp_highest_sub > 03_04      6grp_cgc > 76      6grp_high1_sub > 03_04      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 773
1 2 3 4 range
A 727.5
(1.4)
P 		491.4
(-3)
P 		556
(-1.8)
P 		815.2
(3)
P 		324
B 654.8
(-1.7)
P 		574.5
(-2.4)
P 		491.2
(-3)
P 		1261
(3)
P 		770
C 751.8
(3)
P 		496.6
(-2.8)
P 		488.1
(-3)
P 		743
(2.8)
P 		264
avr 711.4
(-0.2) 		520.8
(-2.9) 		511.8
(-3) 		939.7
(3) 		428

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 392
1 2 3 4 5 6 range
A 462.6
(-2.1)
P 		424.8
(-3)
P 		665.7
(2.4)
P 		536.2
(-0.5)
P 		691.2
(3)
P 		585.5
(0.6)
P 		266
B 453.5
(-3)
P 		487.7
(-2.4)
P 		774.2
(3)
P 		691.8
(1.5)
P 		703.5
(1.7)
P 		551.9
(-1.2)
P 		321
C 381.8
(-3)
P 		551.2
(0.2)
P 		701.7
(3)
P 		702.1
(3)
P 		508.8
(-0.6)
P 		567.9
(0.5)
P 		320
avr 432.6
(-3) 		487.9
(-1.8) 		713.9
(3) 		643.4
(1.5) 		634.5
(1.3) 		568.4
(-0.1) 		281
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 264.9
(3)
P 		106.7
(-3)
P 		145.4
(-1.5)
P 		119.3
(-2.5)
P 		158
B 208.8
(0.7)
P 		141.9
(-1.9)
P 		113.8
(-3)
P 		268.7
(3)
P 		155
C 248.9
(3)
P 		142.8
(-2.2)
P 		170.1
(-0.8)
P 		125.3
(-3)
P 		124
avr 240.9
(3) 		130.5
(-3) 		143.1
(-2.3) 		171.1
(-0.8) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 85.3
(-3)
P 		151.1
(0.2)
P 		145
(-0.1)
P 		136
(-0.5)
P 		208.6
(3)
P 		142.6
(-0.2)
P 		123
B 157.8
(-3)
P 		162.3
(-2.8)
P 		188
(-1.6)
P 		183.2
(-1.8)
P 		285.8
(3)
P 		205.8
(-0.8)
P 		128
C 141.5
(-3)
P 		168.2
(0.3)
P 		178.6
(1.6)
P 		141.2
(-3)
P 		164.6
(-0.1)
P 		190.1
(3)
P 		49
avr 128.2
(-3) 		160.5
(-0.9) 		170.5
(-0.2) 		153.5
(-1.3) 		219.7
(3) 		179.5
(0.4) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179591_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9850
Sequence Type Exemplar sequence
Representative Public ID W02A2.2 NCBI
Target Description W02A2.2 /REP_DB=WormBase Gene ID /WP=CE21232 /TR=Q9XUB7 /GB=CAB05305.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070160(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070160 NCBI Caenorhabditis elegans Fatty Acid/Retinol binding protein family member (far-6) (far-6) mRNA, complete cds. 11/11 None
SNAP00000017633 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13328330:13328932:1 11/11 None
GENEFINDER00000017643 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13328330:13328932:1 11/11 None
W02A2.2 ENSEMBL cdna:known chromosome:CEL140:IV:13328328:13329273:1 gene:W02A2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13328335-13328938(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol far-6
Ensembl W02A2.2
Entrez Gene 189096 Entrez gene
SwissProt Q9XUB7 EMBL-EBI
WormBase CE21232 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05305 Hypothetical protein W02A2.2 [Caenorhabditis elegans] ref|NP_502561.1| Fatty Acid/Retinol binding protein family member (far-6) [Caenorhabditis elegans] 1.0E-88
blast CAA79617 Hypothetical protein F02A9.3 [Caenorhabditis elegans] ref|NP_499011.1| Fatty Acid/Retinol binding protein family member (far-2) [Caenorhabditis elegans] sp|P34383|FAR2_CAEEL Fatty-acid and retinol-binding protein 2 precursor 2.0E-47
blast CAE62670 Hypothetical protein CBG06811 [Caenorhabditis briggsae] 2.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR008632 EMBL-EBI Nematode fatty acid retinoid binding 2.7E-85
Sequence
Target Sequence 
>C. ELEGANS:179591_AT
gcatcttccttgtcatagcacttgcctccgtcgctgtcttttctgctccaatttcacgct
taccacaaagcttagacgacatcccagctgagttcaaggaactcatcccagctaaagtta
ctgaataccttaaatccatcactactgaggagaaagctgctattaaggaatttatcaaaa
gtgttatgggaggaaacaaatctgttgaagaattgagtgctgatatcaaggagcggtccc
catccctgtacgctaaggttgaaaaactcgacgtcctactccgcacaaaactcgcgaaac
tcgaccccgccgctctggctttattcgggaaagtcatcgctcagggactttctttccggc
aacagttccatgccggataccagccaactcctgagatggtaaagaaactcttcaagggat
acattgctgaatataaaacactttctgaaaacgccaaggccaccatcaccgatgagttcc
ccatcgtcgttgaattctttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCTTCCTTGTCATAGCACTTGC 566 309 20 Antisense
ACGACATCCCAGCTGAGTTCAAGGA 102 91 95 Antisense
GAATACCTTAAATCCATCACTACTG 698 325 142 Antisense
CTGATATCAAGGAGCGGTCCCCATC 165 239 239 Antisense
TTGAAAAACTCGACGTCCTACTCCG 362 703 278 Antisense
TCCTACTCCGCACAAAACTCGCGAA 529 591 293 Antisense
AGTCATCGCTCAGGGACTTTCTTTC 496 61 351 Antisense
TTTCTTTCCGGCAACAGTTCCATGC 600 671 368 Antisense
GATACCAGCCAACTCCTGAGATGGT 230 425 395 Antisense
CTGAAAACGCCAAGGCCACCATCAC 128 239 464 Antisense
TCCCCATCGTCGTTGAATTCTTTCA 182 597 497 Antisense
Sequence Source Affymetrix Proprietary Database