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[179590_at]

Description R11D1.3 /REP_DB=WormBase Gene ID /WP=CE06308 /TR=Q21932 /GB=CAA99900.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 06      6grp_total > 77      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5413
1 2 3 4 range
A 73.2
(-3)
P 		96.2
(-2.9)
P 		51.5
(-3)
A 		5227.7
(3)
P 		5176
B 73.5
(-3)
P 		126.9
(-2.9)
P 		82.4
(-3)
P 		5464.4
(3)
P 		5391
C 85.1
(-3)
P 		100.7
(-3)
P 		106.7
(-3)
P 		5062.2
(3)
P 		4977
avr 77.3
(-3) 		107.9
(-3) 		80.2
(-3) 		5251.4
(3) 		5174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 590
1 2 3 4 5 6 range
A 54.9
(-2.3)
A 		38.2
(-2.6)
A 		4.5
(-3)
A 		9.8
(-2.9)
A 		96.1
(-1.8)
P 		456.1
(3)
P 		452
B 31.8
(-2.8)
A 		34
(-2.7)
A 		12
(-3)
A 		37.5
(-2.7)
A 		73.4
(-2.2)
P 		495.6
(3)
P 		484
C 22.7
(-2.9)
A 		39.9
(-2.7)
A 		25.8
(-2.9)
A 		13.4
(-3)
A 		152.3
(-1.6)
P 		594.2
(3)
P 		581
avr 36.5
(-2.7) 		37.4
(-2.7) 		14.1
(-3) 		20.2
(-2.9) 		107.3
(-1.9) 		515.3
(3) 		501
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1151
1 2 3 4 range
A 26.7
(-2.9)
P 		20.9
(-2.9)
P 		13.5
(-3)
A 		765.2
(3)
P 		752
B 23.4
(-3)
P 		31.3
(-2.9)
P 		19.1
(-3)
P 		1164.5
(3)
P 		1145
C 28.2
(-3)
P 		28.9
(-3)
P 		37.2
(-2.9)
P 		853.6
(3)
P 		825
avr 26.1
(-3) 		27
(-3) 		23.3
(-3) 		927.8
(3) 		905

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 10.1
(-2.5)
A 		13.6
(-2.3)
A 		1
(-3)
A 		2.5
(-2.9)
A 		29
(-1.5)
P 		111.1
(3)
P 		110
B 11.1
(-2.7)
A 		11.3
(-2.7)
A 		2.9
(-3)
A 		9.9
(-2.8)
A 		29.8
(-2.1)
P 		184.8
(3)
P 		182
C 8.4
(-2.8)
A 		12.2
(-2.7)
A 		6.6
(-2.9)
A 		2.7
(-3)
A 		49.3
(-1.6)
P 		198.9
(3)
P 		196
avr 9.9
(-2.8) 		12.4
(-2.7) 		3.5
(-3) 		5
(-2.9) 		36
(-1.8) 		164.9
(3) 		161
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179590_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12996
Sequence Type Exemplar sequence
Representative Public ID R11D1.3 NCBI
Target Description R11D1.3 /REP_DB=WormBase Gene ID /WP=CE06308 /TR=Q21932 /GB=CAA99900.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073773(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073773 NCBI Caenorhabditis elegans R11D1.3 (R11D1.3) mRNA, complete cds. 11/11 None
SNAP00000040851 ENSEMBL cdna:SNAP chromosome:CEL140:V:12713927:12714685:-1 11/11 None
GENEFINDER00000040861 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12713927:12714685:-1 11/11 None
R11D1.3 ENSEMBL cdna:known chromosome:CEL140:V:12713927:12714685:-1 gene:R11D1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12713926-12714685(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R11D1.3
Entrez Gene 187804 Entrez gene
SwissProt Q21932 EMBL-EBI
WormBase CE06308 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99900 Hypothetical protein R11D1.3 [Caenorhabditis elegans] ref|NP_506174.1| R11D1.3 [Caenorhabditis elegans] 1.0E-113
blast CAE63971 Hypothetical protein CBG08560 [Caenorhabditis briggsae] 2.0E-74
blast CAE63972 Hypothetical protein CBG08562 [Caenorhabditis briggsae] 1.0E-63
Sequence
Target Sequence 
>C. ELEGANS:179590_AT
ttaattctcgttttactcgtacaatatagtcatggagctacgaatcgtgacacaatgatg
gatatggttactcaaaagttaggagttacattctacacatctactgaacttggagtgatt
gcaaaatgctgtgagacacagttttggaaaactccaaacaacagcacagcagtcctcgca
gaaggcaaaaaatgtgtattaaataactcaggaaacaaagctgttcaagcactttctctt
tacagcaatgccaacaattgtcttaatcctgattcacttgatacagttgtcacaaaattg
attggtccaattgaaacactcactgcagcactggtgaagaaaataaaggcaacccttaac
gattgcaaaaagacgaatacacaaccagctgcagccaaacaggagacatgtcttcagaaa
acatatggagttgcaaaagctgcaattacactcacatactgtgatgggatatgtaagaag
gttgtgaaccagcatgttagtgcaaaatggtggggttgtgcactcaaactgctcccttct
gtgatgaatacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAATTCTCGTTTTACTCGTACAAT 690 683 31 Antisense
GGAGTTACATTCTACACATCTACTG 620 517 112 Antisense
CCAAACAACAGCACAGCAGTCCTCG 650 275 184 Antisense
AAAGCTGTTCAAGCACTTTCTCTTT 88 125 247 Antisense
ACTTTCTCTTTACAGCAATGCCAAC 252 103 261 Antisense
AACAATTGTCTTAATCCTGATTCAC 252 135 283 Antisense
TGAAACACTCACTGCAGCACTGGTG 268 573 342 Antisense
AGACGAATACACAACCAGCTGCAGC 176 71 401 Antisense
AAAGCTGCAATTACACTCACATACT 139 123 466 Antisense
TGGGGTTGTGCACTCAAACTGCTCC 598 553 541 Antisense
ACTGCTCCCTTCTGTGATGAATACG 242 97 558 Antisense
Sequence Source Affymetrix Proprietary Database