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[179588_at]

Description T03F7.2 /REP_DB=WormBase Gene ID /WP=CE06345 /TR=Q22113 /GB=CAA98516.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 27      6grp_cgc > 95      6grp_cgc_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 22.3
(1.8)
A 		13.9
(-1.9)
A 		11.5
(-3)
A 		25.1
(3)
A 		14
B 11.1
(-2.3)
A 		16.4
(-1.1)
A 		35.7
(3)
A 		7.6
(-3)
A 		28
C 29.3
(0.6)
A 		42.2
(2.9)
A 		9.4
(-3)
A 		42.7
(3)
A 		33
avr 20.9
(-1.1) 		24.2
(2.1) 		18.9
(-3) 		25.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 26.7
(3)
A 		14.7
(-0.6)
A 		8.9
(-2.3)
A 		23.1
(1.9)
A 		6.5
(-3)
A 		7.8
(-2.6)
A 		20
B 12.2
(-1.9)
A 		5.1
(-2.8)
A 		3.5
(-3)
A 		52.4
(3)
A 		5.1
(-2.8)
A 		4.8
(-2.8)
A 		49
C 16.3
(3)
A 		5.9
(-1.8)
A 		6
(-1.7)
A 		3.2
(-3)
A 		6.3
(-1.6)
A 		3.7
(-2.8)
A 		13
avr 18.4
(0.8) 		8.6
(-2.1) 		6.1
(-2.8) 		26.2
(3) 		6
(-2.8) 		5.4
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 8.1
(3)
A 		3
(-3)
A 		3
(-3)
A 		3.7
(-2.2)
A 		5
B 3.5
(-1.3)
A 		4.1
(-0.8)
A 		8.3
(3)
A 		1.6
(-3)
A 		7
C 9.7
(1.4)
A 		12.1
(3)
A 		3.3
(-3)
A 		7.2
(-0.3)
A 		9
avr 7.1
(3) 		6.4
(1.6) 		4.9
(-1.6) 		4.2
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.9
(1.5)
A 		5.2
(2)
A 		1.9
(-3)
A 		5.9
(3)
A 		1.9
(-3)
A 		1.9
(-3)
A 		4
B 4.3
(-1.4)
A 		1.7
(-2.6)
A 		0.9
(-3)
A 		13.9
(3)
A 		2.1
(-2.4)
A 		1.8
(-2.6)
A 		13
C 6
(3)
A 		1.8
(-1.7)
A 		1.5
(-2)
A 		0.6
(-3)
A 		2
(-1.4)
A 		1.2
(-2.3)
A 		5
avr 5.1
(1.1) 		2.9
(-1.3) 		1.4
(-3) 		6.8
(3) 		2
(-2.3) 		1.6
(-2.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179588_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13391
Sequence Type Exemplar sequence
Representative Public ID T03F7.2 NCBI
Target Description T03F7.2 /REP_DB=WormBase Gene ID /WP=CE06345 /TR=Q22113 /GB=CAA98516.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073471(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073471 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-45) (srh-45) mRNA, complete cds. 10/11 None
T03F7.2 ENSEMBL cdna:known chromosome:CEL140:V:11306239:11307567:-1 gene:T03F7.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015850 2/11 Cross Hyb Matching Probes None
GENEFINDER00000015859 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11306450-11307567(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-45
Ensembl T03F7.2
Entrez Gene 188024 Entrez gene
SwissProt Q22113 EMBL-EBI
WormBase CE36008 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98516 Hypothetical protein T03F7.2 [Caenorhabditis elegans] ref|NP_505872.2| Serpentine Receptor, class H family member (srh-45) [Caenorhabditis elegans] 0.0
blast CAE75217 Hypothetical protein CBG23166 [Caenorhabditis briggsae] 1.0E-118
blast CAA98518 Hypothetical protein T03F7.4 [Caenorhabditis elegans] ref|NP_505870.2| Serpentine Receptor, class H family member (srh-47) [Caenorhabditis elegans] 3.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505872.2 7 36-58,71-93,113-135,155-177,212-234,257-279,294-313
T03F7.2 7 36-58,71-93,113-135,155-177,212-234,257-279,294-313
Sequence
Target Sequence 
>C. ELEGANS:179588_AT
gctggattcactgtcggattacttccatatcttggtgtatccactcaacttcaaggatac
ataggaattggttgtttaggaaatctcgtagttttcatttcagtgcttgctctctcacta
ccaattttgtttgaaaatagacaaagatatcttgttaatagcttcaaaatcactcgaccc
atctcgcgaataatattttacggattcaatgtactatttgtaccaatctcgttgttcggc
gtatttgcaatatttcctgaacaacaatcagctcggcaggcgattcttcgtacccttccc
tgtcctacagaaacatattttacgcattctgtttttgtattgagtttgaaccatactcca
atcatcacatatttgtgtgctttatcaatagtcgccgtcgtgcagattctattttttggt
ggtcactcgttaacttacctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGGATTCACTGTCGGATTACTTC 169 295 307 Antisense
ATCTTGGTGTATCCACTCAACTTCA 667 29 335 Antisense
CGTAGTTTTCATTTCAGTGCTTGCT 48 247 393 Antisense
ATAGCTTCAAAATCACTCGACCCAT 674 21 464 Antisense
ACTCGACCCATCTCGCGAATAATAT 241 99 478 Antisense
ATTTGTACCAATCTCGTTGTTCGGC 369 15 522 Antisense
GAACAACAATCAGCTCGGCAGGCGA 204 353 565 Antisense
GAACCATACTCCAATCATCACATAT 681 345 654 Antisense
GTGTGCTTTATCAATAGTCGCCGTC 671 487 681 Antisense
ATAGTCGCCGTCGTGCAGATTCTAT 576 21 694 Antisense
GTGGTCACTCGTTAACTTACCTGAA 671 489 725 Antisense
Sequence Source Affymetrix Proprietary Database