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[179587_at]

Description F44F4.3 /REP_DB=WormBase Gene ID /WP=CE00999 /TR=Q20403 /GB=CAA85454.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 12      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 35.5
(-1.3)
A 		3.2
(-3)
A 		4.6
(-2.9)
A 		119.3
(3)
A 		116
B 36.4
(-1)
A 		7.8
(-2.8)
A 		4.4
(-3)
A 		100.4
(3)
M 		96
C 19.3
(-2.1)
A 		35.3
(-1.3)
A 		3.4
(-3)
A 		114.4
(3)
P 		111
avr 30.4
(-1.5) 		15.4
(-2.4) 		4.1
(-3) 		111.4
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 64.4
(-0)
P 		40.2
(-1.9)
A 		26.4
(-3)
A 		100.1
(2.8)
M 		77.3
(1)
A 		102.7
(3)
A 		76
B 41.5
(-3)
A 		70
(-0.3)
A 		66.2
(-0.7)
A 		105.6
(3)
P 		48.4
(-2.4)
A 		82.1
(0.8)
M 		64
C 113.3
(3)
A 		96.6
(1.4)
P 		87.5
(0.6)
A 		81.2
(-0)
M 		49.4
(-3)
A 		108.1
(2.5)
M 		64
avr 73.1
(-0.8) 		68.9
(-1.4) 		60
(-2.8) 		95.6
(2.7) 		58.4
(-3) 		97.6
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 12.9
(1.4)
A 		0.7
(-3)
A 		1.2
(-2.8)
A 		17.5
(3)
A 		17
B 11.6
(0.1)
A 		1.9
(-2.7)
A 		1
(-3)
A 		21.4
(3)
M 		20
C 6.4
(-1.3)
A 		10.2
(-0)
A 		1.2
(-3)
A 		19.3
(3)
P 		18
avr 10.3
(0) 		4.3
(-2) 		1.1
(-3) 		19.4
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 11.9
(-1.1)
P 		14.3
(-0.4)
A 		5.7
(-3)
A 		25.4
(3)
M 		23.3
(2.4)
A 		25
(2.9)
A 		20
B 14.4
(-3)
A 		23.3
(0.3)
A 		16.1
(-2.4)
A 		28
(2)
P 		19.7
(-1)
A 		30.6
(3)
M 		16
C 42
(3)
A 		29.5
(0.1)
P 		22.3
(-1.5)
A 		16.3
(-2.9)
M 		16
(-3)
A 		36.2
(1.7)
M 		26
avr 22.8
(0.1) 		22.4
(-0.1) 		14.7
(-3) 		23.2
(0.2) 		19.7
(-1.1) 		30.6
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179587_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3686
Sequence Type Exemplar sequence
Representative Public ID F44F4.3 NCBI
Target Description F44F4.3 /REP_DB=WormBase Gene ID /WP=CE00999 /TR=Q20403 /GB=CAA85454.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063941(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063941 NCBI Caenorhabditis elegans F44F4.3 (F44F4.3) mRNA, complete cds. 11/11 None
SNAP00000037180 ENSEMBL cdna:SNAP chromosome:CEL140:II:10884640:10885789:-1 11/11 None
GENEFINDER00000037193 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10884640:10885789:-1 11/11 None
F44F4.3 ENSEMBL cdna:known chromosome:CEL140:II:10884640:10885789:-1 gene:F44F4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10884636-10885786(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44F4.3
Entrez Gene 185749 Entrez gene
SwissProt Q20403 EMBL-EBI
WormBase CE00999 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85454 Hypothetical protein F44F4.3 [Caenorhabditis elegans] ref|NP_496342.1| F44F4.3 [Caenorhabditis elegans] 1.0E-118
blast CAE73237 Hypothetical protein CBG20646 [Caenorhabditis briggsae] 3.0E-74
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496342.1 1 201-223
F44F4.3 1 201-223
SNAP00000037180 1 201-223
GENEFINDER00000037193 1 201-223
Sequence
Target Sequence 
>C. ELEGANS:179587_AT
gcgggagctctcatcaatttgtaaaatggaagcttatacatcaaaaattgaggataaaac
gaaacagagaaactatatggctactattacaaggcaattgaagttttccgaggctctgac
acgatgtgacgcgttgaatcagcttaatctaatcaaaaccccgatgaatcaatgggcggt
acttattcgaggacacgccactgatattattcttcccttgaaatctgaaaaaggcggttt
taaaaaatcttcgttagattttgccttgaattcgctgttttttgcttcagcttatggttt
tggagattctactttcaaatctcttggcggagaaactggtgttcgagagaagctcttgtt
catcactgtcatcgtctacgtcgtggtggtttttgtggcagttgttgcactggttattct
cgtggttttgttctttattcgaagaaaagccaatatcagaaaacgggagagtgagaagag
caagctgttgcgaaatccggcgaacaacacagacaatgatgcccctgtggaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGGAGCTCTCATCAATTTGTAAA 249 293 246 Antisense
TTCCGAGGCTCTGACACGATGTGAC 112 699 351 Antisense
TGGGCGGTACTTATTCGAGGACACG 705 515 418 Antisense
GACACGCCACTGATATTATTCTTCC 524 367 437 Antisense
AGATTTTGCCTTGAATTCGCTGTTT 26 67 501 Antisense
TTCTACTTTCAAATCTCTTGGCGGA 231 691 552 Antisense
AGAAGCTCTTGTTCATCACTGTCAT 206 75 593 Antisense
TGTCATCGTCTACGTCGTGGTGGTT 94 559 612 Antisense
TGGTTATTCTCGTGGTTTTGTTCTT 371 549 656 Antisense
GCAAGCTGTTGCGAAATCCGGCGAA 217 321 725 Antisense
AGACAATGATGCCCCTGTGGAAATT 202 71 756 Antisense
Sequence Source Affymetrix Proprietary Database