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[179586_at]

Description F14F8.9 /REP_DB=WormBase Gene ID /WP=CE18593 /TR=Q9XU37 /GB=CAB07185.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 4.2
(-3)
A 		14.9
(-1.8)
A 		56.4
(3)
P 		18.6
(-1.3)
A 		52
B 12.2
(-1.8)
A 		34.3
(1)
A 		50.3
(3)
A 		2.4
(-3)
A 		48
C 39.5
(0.2)
A 		26.3
(-2.9)
A 		25.9
(-3)
A 		51.5
(3)
A 		26
avr 18.6
(-3) 		25.2
(-1.5) 		44.2
(3) 		24.2
(-1.7) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 48
(1.1)
A 		32.4
(-1.2)
A 		61
(3)
P 		39.7
(-0.1)
A 		20.3
(-3)
A 		55.1
(2.1)
A 		41
B 2.9
(-3)
A 		13.9
(-1.3)
A 		41.9
(3)
A 		41.7
(3)
A 		12.8
(-1.5)
A 		14.9
(-1.2)
A 		39
C 28.6
(0.2)
A 		28.5
(0.2)
A 		20.8
(-1.2)
A 		15
(-2.3)
A 		43.2
(3)
P 		11.4
(-3)
A 		32
avr 26.5
(-2.4) 		24.9
(-3) 		41.2
(3) 		32.1
(-0.3) 		25.4
(-2.8) 		27.1
(-2.2) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.5
(-3)
A 		3.2
(-2.2)
A 		14.7
(3)
P 		2.7
(-2.5)
A 		13
B 3.9
(-1.2)
A 		8.5
(1.3)
A 		11.7
(3)
A 		0.5
(-3)
A 		11
C 13.1
(3)
A 		7.6
(-3)
A 		9
(-1.5)
A 		8.7
(-1.8)
A 		6
avr 6.2
(-1.3) 		6.4
(-1.2) 		11.8
(3) 		4
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 8.9
(-0.7)
A 		11.5
(1.4)
A 		13.3
(2.9)
P 		10.1
(0.3)
A 		6.1
(-3)
A 		13.4
(3)
A 		7
B 1
(-3)
A 		4.6
(-0.9)
A 		10.2
(2.5)
A 		11.1
(3)
A 		5.2
(-0.5)
A 		5.6
(-0.3)
A 		10
C 10.6
(1.1)
A 		8.7
(0.1)
A 		5.3
(-1.7)
A 		3
(-3)
A 		14
(3)
P 		3.8
(-2.6)
A 		11
avr 6.8
(-3) 		8.3
(0.2) 		9.6
(3) 		8.1
(-0.2) 		8.4
(0.4) 		7.6
(-1.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179586_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13819
Sequence Type Exemplar sequence
Representative Public ID F14F8.9 NCBI
Target Description F14F8.9 /REP_DB=WormBase Gene ID /WP=CE18593 /TR=Q9XU37 /GB=CAB07185.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074816(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074816 NCBI Caenorhabditis elegans F14F8.9 (F14F8.9) mRNA, complete cds. 11/11 None
SNAP00000022521 ENSEMBL cdna:SNAP chromosome:CEL140:V:16670273:16671155:-1 11/11 None
GENEFINDER00000022529 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16670273:16672751:-1 11/11 None
F14F8.9 ENSEMBL cdna:known chromosome:CEL140:V:16670273:16671155:-1 gene:F14F8.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16670272-16671155(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14F8.9
Entrez Gene 184483 Entrez gene
SwissProt Q9XU37 EMBL-EBI
WormBase CE18593 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6298 mismatch repair inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3684 damaged DNA binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07185 Hypothetical protein F14F8.9 [Caenorhabditis elegans] ref|NP_507217.1| F14F8.9 [Caenorhabditis elegans] 1.0E-113
blast CAB07185 Hypothetical protein F14F8.9 [Caenorhabditis elegans] ref|NP_507217.1| F14F8.9 [Caenorhabditis elegans] 1.0E-112
blast CAB07184 Hypothetical protein F14F8.1 [Caenorhabditis elegans] ref|NP_507218.1| Seven TM Receptor family member (str-61) [Caenorhabditis elegans] 4.0E-69
blast AAC04405 Seven tm receptor protein 63 [Caenorhabditis elegans] ref|NP_503931.1| Seven TM Receptor family member (str-63) [Caenorhabditis elegans] 5.0E-42
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000022529 3 53-75,102-124,139-161
Sequence
Target Sequence 
>C. ELEGANS:179586_AT
gatggagtcctctatgggattacaaatgattgggtggatctcactgcgatgctgaatgcg
gaagatttgagagcaacccgcaaaaggctcatcgaagatcgatgcgacagatatctgatc
gagacattccataacatgagaaaccgtttcaaaagcgagaagaactggagacttacaaaa
tcctgcgagaattatatcaatttccaagtgcgcaagaggaacgagcacattgacaggatg
gattttctggagccacaaatgcttatcttcgaccttcactggttcacactcggcggagct
ttggattttgtgagagaaattgagaaagctttgaagaattgtaagaataagctcatcgag
cacgatgaagttgtcaccctaataattggtaaaggaaatcattcccgtcatcaagtgccc
gtgatctacaacaaacttatagaaatctactcggataggatcagtgtggatgttaagaat
acggggagagttttccttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGAGTCCTCTATGGGATTACAA 431 407 58 Antisense
GATTGGGTGGATCTCACTGCGATGC 189 435 85 Antisense
GATCTCACTGCGATGCTGAATGCGG 524 419 94 Antisense
GCAACCCGCAAAAGGCTCATCGAAG 99 321 130 Antisense
ATCTGATCGAGACATTCCATAACAT 71 35 170 Antisense
CACAAATGCTTATCTTCGACCTTCA 314 193 311 Antisense
TTCACACTCGGCGGAGCTTTGGATT 17 687 340 Antisense
GAGCACGATGAAGTTGTCACCCTAA 311 389 415 Antisense
AGGAAATCATTCCCGTCATCAAGTG 477 55 450 Antisense
CAAGTGCCCGTGATCTACAACAAAC 552 183 469 Antisense
GAATACGGGGAGAGTTTTCCTTCAT 45 151 534 Antisense
Sequence Source Affymetrix Proprietary Database