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[179585_at]

Description R151.1 /REP_DB=WormBase Gene ID /WP=CE00746 /TR=Q21995 /GB=AAK29852.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 23      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 80      6grp_total > 12      4grp_total > 44      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 183.3
(0.7)
P 		214.6
(3)
P 		191.2
(1.3)
P 		134.3
(-3)
P 		80
B 169.6
(1)
P 		196.3
(3)
P 		135.1
(-1.7)
P 		117.4
(-3)
P 		79
C 230.3
(2.3)
P 		241.2
(3)
P 		178.4
(-1.3)
P 		153.4
(-3)
P 		88
avr 194.4
(1.3) 		217.4
(3) 		168.2
(-0.6) 		135
(-3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 194.4
(-1.2)
P 		331.1
(3)
P 		173.9
(-1.9)
P 		287.4
(1.7)
P 		154.8
(-2.4)
P 		136.8
(-3)
P 		194
B 206.4
(0.7)
P 		259
(3)
P 		228.8
(1.7)
P 		209.8
(0.8)
P 		197.1
(0.3)
P 		123.2
(-3)
P 		136
C 307.6
(3)
P 		290.7
(2.5)
P 		308.8
(3)
P 		230
(0.7)
P 		204.7
(-0)
P 		103
(-3)
P 		206
avr 236.1
(1) 		293.6
(3) 		237.2
(1) 		242.4
(1.2) 		185.5
(-0.8) 		121
(-3) 		173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 66.7
(3)
P 		46.6
(0.4)
P 		50
(0.9)
P 		19.7
(-3)
P 		47
B 54.1
(3)
P 		48.5
(1.8)
P 		31.3
(-1.7)
P 		25
(-3)
P 		29
C 76.2
(3)
P 		69.3
(2.2)
P 		62.2
(1.3)
P 		25.9
(-3)
P 		50
avr 65.7
(3) 		54.8
(1.5) 		47.8
(0.5) 		23.5
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 35.8
(-2.8)
P 		117.7
(3)
P 		37.9
(-2.7)
P 		72.9
(-0.2)
P 		46.7
(-2)
P 		33.3
(-3)
P 		84
B 71.8
(0.9)
P 		86.2
(3)
P 		55.6
(-1.6)
P 		55.6
(-1.6)
P 		80.1
(2.1)
P 		45.9
(-3)
P 		40
C 114
(3)
P 		88.7
(1.1)
P 		78.6
(0.3)
P 		46.3
(-2.1)
P 		66.3
(-0.6)
P 		34.5
(-3)
P 		80
avr 73.9
(0.6) 		97.5
(3) 		57.4
(-1) 		58.3
(-0.9) 		64.4
(-0.3) 		37.9
(-3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179585_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6500
Sequence Type Exemplar sequence
Representative Public ID R151.1 NCBI
Target Description R151.1 /REP_DB=WormBase Gene ID /WP=CE00746 /TR=Q21995 /GB=AAK29852.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066187(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066187 NCBI Caenorhabditis elegans R151.1 (R151.1) mRNA, complete cds. 11/11 None
SNAP00000037935 ENSEMBL cdna:SNAP chromosome:CEL140:III:7217763:7219667:1 11/11 None
GENEFINDER00000037946 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7218737:7220990:1 11/11 None
R151.1 ENSEMBL cdna:known chromosome:CEL140:III:7217763:7219540:1 gene:R151.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7217760-7219538(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R151.1
Entrez Gene 187907 Entrez gene
SwissProt Q21995 EMBL-EBI
WormBase CE00746 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29852 Hypothetical protein R151.1 [Caenorhabditis elegans] ref|NP_498588.1| R151.1 [Caenorhabditis elegans] 0.0
blast CAE70157 Hypothetical protein CBG16624 [Caenorhabditis briggsae] 1.0E-154
blast AAP82638 Hypothetical protein R151.4a [Caenorhabditis elegans] ref|NP_001022729.1| R151.4a [Caenorhabditis elegans] pir||T16765 hypothetical protein R151.4 - Caenorhabditis elegans 1.0E-146
blast CAE70158 Hypothetical protein CBG16625 [Caenorhabditis briggsae] 7.0E-96
blast AAK29852 Hypothetical protein R151.1 [Caenorhabditis elegans] ref|NP_498588.1| R151.1 [Caenorhabditis elegans] 2.0E-90
Protein Families
Method ID Description E-Value
hanks 1.2.10 AGC group; AGC I Diacylglycerol-activated/phospholipid-dependent protein kinase C (PKC) family; AplII 3.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.5E-85
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498588.1 1 276-298
R151.1 1 276-298
SNAP00000037935 1 276-298
GENEFINDER00000037946 1 113-135
Sequence
Target Sequence 
>C. ELEGANS:179585_AT
gtacacctttagaatagccaacgccgattcttatgagatttctgcaaaatctgcagagac
atctgctcacacctaccaatatcaactaccgttccaatttaccccgtttcaacaatacaa
gatttcaatattcgctgttgatgacagtttctgtcataatcaagatgtattccatatatt
caatacaacaaatgccacgttttctagttctgaaattccgaaaacaacaccgattccaga
aatatctggctcagcaattaccaagactacaatgcttatggagtcatcaattttggtaat
tttcctaattgtggtcgcctgtatgtcaccgatttgtacaatgatcgtacttctttgcct
cagaagacggaaaaaggaaatcaaaaaacgtcatcacttcctccatcgtcgatcactttc
atgttctcgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACACCTTTAGAATAGCCAACGCC 105 459 546 Antisense
AGCCAACGCCGATTCTTATGAGATT 175 85 561 Antisense
TGCAGAGACATCTGCTCACACCTAC 91 577 597 Antisense
CACACCTACCAATATCAACTACCGT 258 193 613 Antisense
CAAATGCCACGTTTTCTAGTTCTGA 627 191 734 Antisense
GGCTCAGCAATTACCAAGACTACAA 343 539 793 Antisense
AATTTTCCTAATTGTGGTCGCCTGT 356 175 843 Antisense
TCGCCTGTATGTCACCGATTTGTAC 587 599 860 Antisense
ACAATGATCGTACTTCTTTGCCTCA 709 113 883 Antisense
TCAAAAAACGTCATCACTTCCTCCA 637 629 926 Antisense
CGTCGATCACTTTCATGTTCTCGTC 154 247 952 Antisense
Sequence Source Affymetrix Proprietary Database