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[179584_at]

Description W04A4.5 /REP_DB=WormBase Gene ID /WP=CE25138 /TR=O18167 /GB=CAB04900.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 91      6grp_total > 0      4grp_total > 55      6grp_total_sub > Hat      6grp_highest_sub > In      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 286.5
(3)
P 		170.7
(-3)
P 		198.2
(-1.6)
P 		237.1
(0.4)
P 		116
B 188.8
(3)
P 		170.7
(-0.2)
P 		155.3
(-3)
P 		155.1
(-3)
P 		34
C 237.6
(3)
P 		130.1
(-3)
P 		209.9
(1.5)
P 		155.3
(-1.6)
P 		108
avr 237.6
(3) 		157.2
(-3) 		187.8
(-0.7) 		182.5
(-1.1) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 207.3
(-1.8)
P 		207.3
(-1.8)
P 		194.3
(-3)
P 		241.2
(1.2)
P 		224.2
(-0.3)
P 		261.7
(3)
P 		67
B 140.8
(-3)
P 		290
(3)
P 		193.5
(-0.9)
P 		215.4
(0)
P 		210.7
(-0.2)
P 		235.1
(0.8)
P 		149
C 204.2
(-3)
P 		239.2
(1.5)
P 		223.4
(-0.5)
P 		207.3
(-2.6)
P 		251.1
(3)
P 		235.2
(1)
P 		47
avr 184.1
(-3) 		245.5
(3) 		203.7
(-1.1) 		221.3
(0.6) 		228.7
(1.4) 		244
(2.9) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 104.3
(3)
P 		37.1
(-2.8)
P 		51.8
(-1.5)
P 		34.7
(-3)
P 		70
B 60.2
(3)
P 		42.2
(-1)
P 		36
(-2.4)
P 		33.1
(-3)
P 		27
C 78.6
(3)
P 		37.4
(-1.7)
P 		73.1
(2.4)
P 		26.2
(-3)
P 		52
avr 81
(3) 		38.9
(-2.1) 		53.6
(-0.3) 		31.3
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 38.2
(-3)
P 		73.7
(3)
P 		42.3
(-2.3)
P 		61.2
(0.9)
P 		67.7
(2)
P 		63.7
(1.3)
P 		36
B 49
(-2.8)
P 		96.5
(3)
P 		47
(-3)
P 		57
(-1.8)
P 		85.6
(1.7)
P 		87.7
(1.9)
P 		50
C 75.7
(2.2)
P 		73
(1.8)
P 		56.9
(-0.7)
P 		41.7
(-3)
P 		81.2
(3)
P 		78.7
(2.6)
P 		40
avr 54.3
(-2) 		81.1
(3) 		48.7
(-3) 		53.3
(-2.1) 		78.2
(2.5) 		76.7
(2.2) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179584_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2328
Sequence Type Exemplar sequence
Representative Public ID W04A4.5 NCBI
Target Description W04A4.5 /REP_DB=WormBase Gene ID /WP=CE25138 /TR=O18167 /GB=CAB04900.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060995(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060995 NCBI Caenorhabditis elegans W04A4.5 (W04A4.5) mRNA, complete cds. 11/11 None
SNAP00000016124 ENSEMBL cdna:SNAP chromosome:CEL140:I:13671655:13683002:1 11/11 None
GENEFINDER00000016148 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13674698:13683002:1 11/11 None
W04A4.5 ENSEMBL cdna:known chromosome:CEL140:I:13671631:13683099:1 gene:W04A4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13671585-13682933(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04A4.5
Entrez Gene 173238 Entrez gene
SwissProt O18167 EMBL-EBI
WormBase CE25138 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1584702_AT similar to CG12113-PA cfa
CANINE_2:CFA.12095.1.A1_AT similar to CG12113-PA cfa
CANINE_2:CFAAFFX.23870.1.S1_S_AT similar to CG12113-PA cfa
CANINE_2:CFAAFFX.8229.1.S1_AT similar to CG12113-PA cfa
CANINE_2:CFAAFFX.8229.1.S1_S_AT similar to CG12113-PA cfa
DROSOPHILA_2:1629198_AT dm
DROSGENOME1:152496_AT dm
CHICKEN:GGA.10789.2.S1_A_AT similar to RIKEN cDNA 2610034N24 gga
HU35KSUBA:RC_AA443913_AT hypothetical gene MGC16733 similar to CG12113 hs
HU35KSUBC:RC_N75055_AT hypothetical gene MGC16733 similar to CG12113 hs
U133_X3P:HS2.367149.1.S1_3P_S_AT hypothetical gene MGC16733 similar to CG12113 hs
U133_X3P:HS2.14632.1.S1_3P_AT hypothetical gene MGC16733 similar to CG12113 hs
U133_X3P:HS.14632.1.S1_3P_X_AT hypothetical gene MGC16733 similar to CG12113 hs
U133_X3P:HS.14632.1.S1_3P_AT hypothetical gene MGC16733 similar to CG12113 hs
U133_X3P:HS.14632.0.S1_3P_AT hypothetical gene MGC16733 similar to CG12113 hs
U133_X3P:233193_3P_X_AT hypothetical gene MGC16733 similar to CG12113 hs
HG-U133_PLUS_2:1553670_AT hypothetical gene MGC16733 similar to CG12113 hs
HG-U133_PLUS_2:1569253_AT hypothetical gene MGC16733 similar to CG12113 hs
HG-U133_PLUS_2:1569254_S_AT hypothetical gene MGC16733 similar to CG12113 hs
HG-U133_PLUS_2:225169_AT hypothetical gene MGC16733 similar to CG12113 hs
HG-U133B:225169_AT hypothetical gene MGC16733 similar to CG12113 hs
HG-U133_PLUS_2:233193_X_AT hypothetical gene MGC16733 similar to CG12113 hs
HG-U133B:233193_X_AT hypothetical gene MGC16733 similar to CG12113 hs
HG-U95B:53854_AT hypothetical gene MGC16733 similar to CG12113 hs
HG-U95C:61138_R_AT hypothetical gene MGC16733 similar to CG12113 hs
HU35KSUBB:RC_T91578_AT Hypothetical gene MGC16733 similar to CG12113 hs
U133_X3P:HS.292775.0.S1_3P_X_AT Hypothetical gene MGC16733 similar to CG12113 hs
U133_X3P:HS.292775.0.S1_3P_AT Hypothetical gene MGC16733 similar to CG12113 hs
U133_X3P:HS.271245.0.A1_3P_AT Hypothetical gene MGC16733 similar to CG12113 hs
HG-U133_PLUS_2:242202_AT Hypothetical gene MGC16733 similar to CG12113 hs
HG-U133B:242202_AT Hypothetical gene MGC16733 similar to CG12113 hs
HG-U133_PLUS_2:243009_AT Hypothetical gene MGC16733 similar to CG12113 hs
HG-U133B:243009_AT Hypothetical gene MGC16733 similar to CG12113 hs
HG-U95B:48394_AT Hypothetical gene MGC16733 similar to CG12113 hs
HG-U133_PLUS_2:236929_AT Hypothetical protein FLJ25037 hs
HG-U133B:236929_AT Hypothetical protein FLJ25037 hs
HG-U95C:56818_AT Hypothetical gene MGC16733 similar to CG12113 hs
HG-U95D:84018_AT Hypothetical gene MGC16733 similar to CG12113 hs
HG-U95D:88356_AT Hypothetical protein FLJ25037 hs
HU35KSUBC:RC_AA400102_AT Hypothetical gene MGC16733 similar to CG12113 hs
U133_X3P:HS.49051.0.A1_3P_AT Hypothetical gene MGC16733 similar to CG12113 hs
MG-U74BV2:162678_AT RIKEN cDNA 2610034N24 gene mm
MOE430A:1423806_AT RIKEN cDNA 2610034N24 gene mm
MOUSE430A_2:1423806_AT RIKEN cDNA 2610034N24 gene mm
MOUSE430_2:1423806_AT RIKEN cDNA 2610034N24 gene mm
MG-U74BV2:165322_I_AT RIKEN cDNA 2610034N24 gene, mRNA (cDNA clone MGC:7049 IMAGE:3156446) mm
MU19KSUBB:TC33823_AT RIKEN cDNA 2610034N24 gene, mRNA (cDNA clone MGC:7049 IMAGE:3156446) mm
RG-U34C:RC_AI177875_AT similar to RIKEN cDNA 2610034N24 (predicted) rn
RAE230A:1399009_AT similar to RIKEN cDNA 2610034N24 (predicted) rn
RAT230_2:1399009_AT similar to RIKEN cDNA 2610034N24 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB04900 Hypothetical protein W04A4.5 [Caenorhabditis elegans] ref|NP_493396.1| W04A4.5 [Caenorhabditis elegans] 0.0
blast CAE72581 Hypothetical protein CBG19769 [Caenorhabditis briggsae] 0.0
blast T26133 hypothetical protein W04A4.6 - Caenorhabditis elegans 1.0E-120
Sequence
Target Sequence 
>C. ELEGANS:179584_AT
gatggaccttttcgagagatttctgatgaactttccacgtttttagcatcttgtgaacaa
attttctcggttggagatcaaagaaatccgattggattggaggaaaagcgaaaaatcatc
actccaacaacactagtaaatcttttggataaatcaattccaaaacttccattaaaattc
ccatccgctggatcaattcatctgaaatatgctcgaattacgaatccaaataaggactcg
gccgttgaaaatgtgctcaaattctttgctcatttaccacatggaattccattggaattt
gatttatttaatatgaaggttgatgagctggattcggttagaattaaaactgttcatccg
gatggacaatttgatgtgatgcgaccaagaattgaggagattcgaaatgaaaattcacat
ttttcagttacaactcaggtaaaagtaacatgctcatccccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGACCTTTTCGAGAGATTTCTG 353 407 2635 Antisense
AGATTTCTGATGAACTTTCCACGTT 216 65 2651 Antisense
ACTTTCCACGTTTTTAGCATCTTGT 286 103 2664 Antisense
AAAATCATCACTCCAACAACACTAG 566 133 2746 Antisense
TTCCATTAAAATTCCCATCCGCTGG 406 699 2801 Antisense
CCATCCGCTGGATCAATTCATCTGA 445 271 2815 Antisense
GGACTCGGCCGTTGAAAATGTGCTC 444 525 2868 Antisense
AATTCTTTGCTCATTTACCACATGG 67 177 2894 Antisense
ATTAAAACTGTTCATCCGGATGGAC 210 3 2977 Antisense
AATTCACATTTTTCAGTTACAACTC 604 175 3046 Antisense
GTAAAAGTAACATGCTCATCCCCGT 487 461 3073 Antisense
Sequence Source Affymetrix Proprietary Database