[Home] | [Total List]

[179583_at]

Description F59A1.4 /REP_DB=WormBase Gene ID /WP=CE17938 /TR=O62280 /GB=CAB04536.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 26      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 28.3
(-3)
A 		57.1
(3)
A 		51.4
(1.8)
A 		36.3
(-1.3)
A 		29
B 22.9
(3)
A 		15.9
(-0.4)
A 		10.7
(-3)
A 		19.3
(1.2)
A 		12
C 11.3
(-2.4)
A 		17
(-1.5)
A 		7.5
(-3)
A 		44.8
(3)
A 		37
avr 20.8
(-3) 		30
(1.3) 		23.2
(-1.9) 		33.5
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 27.3
(3)
A 		22.8
(1.8)
A 		21.8
(1.6)
A 		6.8
(-2.3)
A 		10.5
(-1.4)
A 		4.3
(-3)
A 		23
B 8.3
(2.3)
A 		5.8
(-1)
A 		4.3
(-3)
A 		8.8
(3)
A 		6.7
(0.2)
A 		8
(1.9)
A 		5
C 9.9
(3)
A 		8.2
(0.6)
A 		6.7
(-1.6)
A 		8.9
(1.6)
A 		5.7
(-3)
A 		6.7
(-1.6)
A 		4
avr 15.2
(3) 		12.3
(1) 		10.9
(0.1) 		8.2
(-1.7) 		7.6
(-2.1) 		6.3
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 10.3
(0.7)
A 		12.4
(2.3)
A 		13.4
(3)
A 		5.3
(-3)
A 		8
B 7.3
(3)
A 		3.9
(-1.3)
A 		2.5
(-3)
A 		4.1
(-1)
A 		5
C 3.8
(-1.6)
A 		4.9
(-0.2)
A 		2.6
(-3)
A 		7.6
(3)
A 		5
avr 7.1
(3) 		7.1
(3) 		6.2
(-0.9) 		5.7
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 5
(0.4)
A 		8.1
(3)
A 		4.7
(0.1)
A 		1.7
(-2.4)
A 		3.2
(-1.1)
A 		1
(-3)
A 		7
B 2.9
(2.7)
A 		1.9
(-0.3)
A 		1
(-3)
A 		2.3
(0.9)
A 		2.7
(2.1)
A 		3
(3)
A 		2
C 3.7
(3)
A 		2.5
(-0.6)
A 		1.7
(-3)
A 		1.8
(-2.7)
A 		1.8
(-2.7)
A 		2.2
(-1.5)
A 		2
avr 3.9
(2.2) 		4.2
(3) 		2.5
(-1.4) 		1.9
(-3) 		2.6
(-1.2) 		2.1
(-2.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179583_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14685
Sequence Type Exemplar sequence
Representative Public ID F59A1.4 NCBI
Target Description F59A1.4 /REP_DB=WormBase Gene ID /WP=CE17938 /TR=O62280 /GB=CAB04536.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075071(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075071 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-89) (str-89) mRNA, complete cds. 11/11 None
SNAP00000002318 ENSEMBL cdna:SNAP chromosome:CEL140:V:17671458:17673906:1 11/11 None
GENEFINDER00000002327 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17671458:17673906:1 11/11 None
F59A1.4 ENSEMBL cdna:known chromosome:CEL140:V:17671458:17673906:1 gene:F59A1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17671457-17673906(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-89
Ensembl F59A1.4
Entrez Gene 186558 Entrez gene
SwissProt O62280 EMBL-EBI
WormBase CE17938 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04536 Hypothetical protein F59A1.4 [Caenorhabditis elegans] ref|NP_507472.1| Seven TM Receptor family member (str-89) [Caenorhabditis elegans] 0.0
blast CAE61734 Hypothetical protein CBG05685 [Caenorhabditis briggsae] 1.0E-139
blast CAE61734 Hypothetical protein CBG05685 [Caenorhabditis briggsae] 1.0E-132
blast AAG24135 Seven tm receptor protein 90 [Caenorhabditis elegans] ref|NP_505092.1| Seven TM Receptor family member (str-90) [Caenorhabditis elegans] 3.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.2E-28
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.8E-13
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.3E-20
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.7E-11
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.9E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507472.1 7 10-29,36-58,88-110,130-152,202-224,245-267,282-304
F59A1.4 7 10-29,36-58,88-110,130-152,202-224,245-267,282-304
SNAP00000002318 7 10-29,36-58,88-110,130-152,202-224,245-267,282-304
GENEFINDER00000002327 7 10-29,36-58,88-110,130-152,205-227,278-300,315-337
Sequence
Target Sequence 
>C. ELEGANS:179583_AT
aataccacgtgacaactgcaccgggcaccattttctgtggaaaatcgatattgttggctg
ttattttgcttaaaattgtggtaatttcctgctcaatcgtaacctattgcggaatccgta
tctggcgtgagatctccatcaaaaaacgtgtggtctcccgtcggaccctcgacatgcaac
gacaattcttccgtgctctggtggttcaaactctaattccaatttttctgctctacctcc
cacttgccacaatgctcttggctccgattctaatggcgaatctgcacaaaatcgatgtaa
tcattcaattctgcttcgttttctacccaatcttggaccccattgctgttttgataattg
tcagagattatcgaagagctatccggaattttttggacgaacagatttggaagaggtttc
tgggcgttttgttgccatggcttttgcccaatagacccattgaagttccaccaatgatcc
atgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATACCACGTGACAACTGCACCGGG 409 145 560 Antisense
TAATTTCCTGCTCAATCGTAACCTA 62 635 641 Antisense
TTGCGGAATCCGTATCTGGCGTGAG 347 701 666 Antisense
TGCAACGACAATTCTTCCGTGCTCT 148 577 734 Antisense
CGTGCTCTGGTGGTTCAAACTCTAA 485 245 751 Antisense
TAATTCCAATTTTTCTGCTCTACCT 61 635 773 Antisense
TGCTCTTGGCTCCGATTCTAATGGC 203 581 812 Antisense
TTGGACCCCATTGCTGTTTTGATAA 437 707 892 Antisense
GGTTTCTGGGCGTTTTGTTGCCATG 671 505 974 Antisense
GCCATGGCTTTTGCCCAATAGACCC 261 281 993 Antisense
GAAGTTCCACCAATGATCCATGTTC 423 337 1021 Antisense
Sequence Source Affymetrix Proprietary Database