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[179582_at]

Description W07A8.5 /REP_DB=WormBase Gene ID /WP=CE20161 /TR=Q9U335 /GB=CAB60333.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 01      6grp_cgc > 97      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 10.1
(-2.7)
A 		5.5
(-3)
A 		26.6
(-1.6)
A 		93.1
(3)
A 		88
B 7.1
(-2.2)
A 		4.8
(-2.6)
A 		2.2
(-3)
A 		37.4
(3)
A 		35
C 6.5
(-2.6)
A 		3.8
(-2.8)
A 		1.2
(-3)
A 		83.1
(3)
M 		82
avr 7.9
(-2.7) 		4.7
(-3) 		10
(-2.5) 		71.2
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 4.3
(-3)
A 		17.7
(-1.7)
A 		8.2
(-2.6)
A 		15.9
(-1.8)
A 		64.5
(3)
A 		21.8
(-1.3)
A 		60
B 9.8
(-1.5)
A 		3.3
(-2.7)
A 		3.7
(-2.6)
A 		34.6
(3)
A 		14.8
(-0.6)
A 		1.4
(-3)
A 		33
C 8
(-2.1)
A 		35.4
(3)
A 		3.9
(-2.9)
A 		4.7
(-2.7)
A 		3.2
(-3)
A 		7.4
(-2.2)
A 		32
avr 7.4
(-2.4) 		18.8
(0.6) 		5.3
(-3) 		18.4
(0.5) 		27.5
(3) 		10.2
(-1.7) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.7
(-1.8)
A 		1.2
(-3)
A 		7
(-0.2)
A 		13.6
(3)
A 		12
B 2.3
(-1.6)
A 		1.2
(-2.4)
A 		0.5
(-3)
A 		8
(3)
A 		8
C 2.1
(-2.3)
A 		1.1
(-2.7)
A 		0.4
(-3)
A 		14
(3)
M 		14
avr 2.7
(-2.2) 		1.2
(-3) 		2.6
(-2.2) 		11.9
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 0.8
(-3)
A 		6.3
(-1.2)
A 		1.8
(-2.7)
A 		4
(-2)
A 		19.5
(3)
A 		5.3
(-1.6)
A 		19
B 3.4
(-1)
A 		1.1
(-2.6)
A 		0.9
(-2.7)
A 		9.2
(3)
A 		6
(0.8)
A 		0.5
(-3)
A 		9
C 3
(-1.7)
A 		10.8
(3)
A 		1
(-2.9)
A 		0.9
(-3)
A 		1.1
(-2.9)
A 		2.5
(-2)
A 		10
avr 2.4
(-2.1) 		6.1
(0.8) 		1.2
(-3) 		4.7
(-0.3) 		8.9
(3) 		2.8
(-1.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179582_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13723
Sequence Type Exemplar sequence
Representative Public ID W07A8.5 NCBI
Target Description W07A8.5 /REP_DB=WormBase Gene ID /WP=CE20161 /TR=Q9U335 /GB=CAB60333.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075604(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075604 NCBI Caenorhabditis elegans Serpentine Receptor, class XA family member (srxa-6) (srxa-6) mRNA, complete cds. 11/11 None
W07A8.5 ENSEMBL cdna:known chromosome:CEL140:V:20733034:20734200:1 gene:W07A8.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017806 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20733033-20734200(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srxa-6
Ensembl W07A8.5
Entrez Gene 189273 Entrez gene
SwissProt Q9U335 EMBL-EBI
WormBase CE20161 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60333 Hypothetical protein W07A8.5 [Caenorhabditis elegans] ref|NP_508005.1| Serpentine Receptor, class XA family member (srxa-6) [Caenorhabditis elegans] 1.0E-170
blast CAB05688 Hypothetical protein C31A11.6 [Caenorhabditis elegans] ref|NP_507119.1| Serpentine Receptor, class XA family member (srxa-7) [Caenorhabditis elegans] 4.0E-96
blast CAE61645 Hypothetical protein CBG05579 [Caenorhabditis briggsae] 8.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 3.6E-99
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508005.1 7 10-32,45-67,92-114,127-149,177-199,240-262,275-292
W07A8.5 7 10-32,45-67,92-114,127-149,177-199,240-262,275-292
Sequence
Target Sequence 
>C. ELEGANS:179582_AT
aattctgattttctgtctgacgcttctgttaattccttatttttccgattgttctgttaa
ctttttggcgagtagcctagagtttcagaccgattgtgctcctgacaaacatccggtcac
gagattcaccaacgccaatgctatatgtattccaacaacgcttctcctcgtgaatttagt
aattattattcatttgaaagcagtacgtcattctacatacacaaagttatttcaaaagac
atctgcagttggttcaaaacgaactagccaattggctcggtgccagaaacgtcgtgagca
tgctctaatgcgtcagacattggctattaccgtatacctgtccttctacgaagtcggtag
ctttttgatgagaacgttcccgatattctatcaaaacctccccgaatcaattcgctctgc
atatttctattttcgtctcgagactatatgcgccattacattcttcgtatacttcatgga
gagtccgtcaattaggaaaacgcttctgggacgatcggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTGATTTTCTGTCTGACGCTT 469 177 414 Antisense
CTGACGCTTCTGTTAATTCCTTATT 691 237 430 Antisense
GTTTCAGACCGATTGTGCTCCTGAC 619 449 495 Antisense
ACATCCGGTCACGAGATTCACCAAC 660 103 522 Antisense
ACAACGCTTCTCCTCGTGAATTTAG 450 113 568 Antisense
TTGGCTATTACCGTATACCTGTCCT 423 683 733 Antisense
ATCAAAACCTCCCCGAATCAATTCG 435 1 803 Antisense
GAATCAATTCGCTCTGCATATTTCT 360 327 817 Antisense
TCGTCTCGAGACTATATGCGCCATT 467 605 846 Antisense
ATGCGCCATTACATTCTTCGTATAC 690 41 861 Antisense
GAAAACGCTTCTGGGACGATCGGAC 288 355 909 Antisense
Sequence Source Affymetrix Proprietary Database