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[179581_at]

Description C17G1.1 /REP_DB=WormBase Gene ID /WP=CE08280 /TR=Q93239 /GB=CAB01671.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 4.5
(-3)
A 		25.7
(3)
A 		8.2
(-2)
A 		9.8
(-1.5)
A 		21
B 5.8
(0.3)
A 		7.6
(1.9)
A 		8.8
(3)
A 		2.1
(-3)
A 		7
C 9.6
(-1)
A 		4.5
(-3)
A 		4.6
(-3)
A 		19.5
(3)
A 		15
avr 6.6
(-3) 		12.6
(3) 		7.2
(-2.4) 		10.5
(0.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 10
(1.6)
A 		2
(-3)
A 		12.4
(3)
A 		5.2
(-1.2)
A 		7.6
(0.2)
A 		7.1
(-0.1)
A 		10
B 7.2
(-1.5)
A 		7.2
(-1.5)
A 		4.1
(-3)
A 		11.4
(0.5)
A 		16.5
(3)
A 		7.2
(-1.5)
A 		12
C 25.6
(3)
A 		20.6
(1.7)
A 		2.3
(-3)
A 		8.3
(-1.5)
A 		7.6
(-1.6)
A 		11.8
(-0.6)
A 		23
avr 14.3
(3) 		9.9
(-0.3) 		6.3
(-3) 		8.3
(-1.5) 		10.6
(0.2) 		8.7
(-1.2) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.6
(-2.7)
A 		5.6
(3)
A 		2.1
(-2)
A 		1.4
(-3)
A 		4
B 1.8
(2.3)
A 		1.9
(2.6)
A 		2
(3)
A 		0.4
(-3)
A 		2
C 3.2
(2.7)
A 		1.3
(-3)
A 		1.6
(-2.1)
A 		3.3
(3)
A 		2
avr 2.2
(-0.5) 		2.9
(3) 		1.9
(-2) 		1.7
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.8
(0.3)
A 		0.7
(-3)
A 		2.7
(3)
A 		1.3
(-1.2)
A 		2.3
(1.8)
A 		1.7
(0)
A 		2
B 2.5
(-1.4)
A 		2.4
(-1.5)
A 		1
(-3)
A 		3
(-0.9)
A 		6.7
(3)
A 		2.7
(-1.2)
A 		6
C 9.5
(3)
A 		6.3
(0.8)
A 		0.6
(-3)
A 		1.7
(-2.3)
A 		2.5
(-1.7)
A 		4
(-0.7)
A 		9
avr 4.6
(3) 		3.1
(0.2) 		1.4
(-3) 		2
(-1.9) 		3.8
(1.5) 		2.8
(-0.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179581_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16181
Sequence Type Exemplar sequence
Representative Public ID C17G1.1 NCBI
Target Description C17G1.1 /REP_DB=WormBase Gene ID /WP=CE08280 /TR=Q93239 /GB=CAB01671.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077263(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077263 NCBI Caenorhabditis elegans C17G1.1 (C17G1.1) mRNA, complete cds. 11/11 None
SNAP00000020416 ENSEMBL cdna:SNAP chromosome:CEL140:X:9919232:9920276:1 11/11 None
GENEFINDER00000020429 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9919232:9920276:1 11/11 None
C17G1.1 ENSEMBL cdna:known chromosome:CEL140:X:9919232:9920276:1 gene:C17G1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9919231-9920276(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17G1.1
Entrez Gene 182740 Entrez gene
SwissProt Q93239 EMBL-EBI
WormBase CE08280 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01671 Hypothetical protein C17G1.1 [Caenorhabditis elegans] ref|NP_509664.1| C17G1.1 [Caenorhabditis elegans] 1.0E-164
blast CAE58740 Hypothetical protein CBG01928 [Caenorhabditis briggsae] 1.0E-14
blast CAA93763 Hypothetical protein C47D12.5 [Caenorhabditis elegans] ref|NP_496495.1| C47D12.5 [Caenorhabditis elegans] 1.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509664.1 1 184-205
C17G1.1 1 184-205
SNAP00000020416 1 184-205
GENEFINDER00000020429 1 184-205
Sequence
Target Sequence 
>C. ELEGANS:179581_AT
agaatgtgcctcggcatgtgtctccatatacaccaagtcgaaaacccgtgaaggatggtt
ttggacaagtgtccttatggattgttccgaggcattgatctggtcatcacccgatttgtc
tctcaaaccgacgacaatggtactcttagacggagtgtatgttgcatccagaaaaggcca
cgatatcaaatatatattctctacaaacaataacaacagcacattggacatcagagagca
tatattttctttcatggttcctggaatcagacagaaaagaactaccttcgggacaaaagt
cctattggcttccattgccgtcataatgatttttgtcgttctcgcattattaaaaattgt
gtacaaagaagagcgtagccgaaaaaataaagatgatcgtgagccagtggttagctactg
tcgtgacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAATGTGCCTCGGCATGTGTCTCC 354 75 264 Antisense
GTCTCCATATACACCAAGTCGAAAA 129 469 283 Antisense
GTGTCCTTATGGATTGTTCCGAGGC 169 485 332 Antisense
GTTCCGAGGCATTGATCTGGTCATC 563 441 347 Antisense
CGATTTGTCTCTCAAACCGACGACA 352 249 375 Antisense
CCGACGACAATGGTACTCTTAGACG 35 263 391 Antisense
TATATTTTCTTTCATGGTTCCTGGA 310 661 504 Antisense
GGGACAAAAGTCCTATTGGCTTCCA 119 495 553 Antisense
TTGGCTTCCATTGCCGTCATAATGA 271 709 568 Antisense
GATTTTTGTCGTTCTCGCATTATTA 215 429 591 Antisense
AGTGGTTAGCTACTGTCGTGACATT 409 59 669 Antisense
Sequence Source Affymetrix Proprietary Database