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[179580_at]

Description F11C1.2 /REP_DB=WormBase Gene ID /WP=CE03187 /TR=Q19343 /GB=CAA91026.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 76      6grp_total > 67      4grp_total > 12      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 458
1 2 3 4 range
A 195.9
(-1.5)
M 		180.3
(-1.7)
A 		98.2
(-3)
A 		490.4
(3)
P 		392
B 271.7
(-1.1)
A 		171.9
(-2.6)
A 		146.8
(-3)
A 		543.8
(3)
P 		397
C 243.1
(-1.8)
A 		174.3
(-2.9)
A 		165.7
(-3)
A 		555.9
(3)
P 		390
avr 236.9
(-1.5) 		175.5
(-2.4) 		136.9
(-3) 		530
(3) 		393

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 194.2
(-3)
P 		231.2
(-2)
A 		243.7
(-1.7)
P 		293.9
(-0.4)
P 		224.4
(-2.2)
P 		427.7
(3)
P 		234
B 195.1
(-1.9)
P 		265.2
(0.5)
P 		236
(-0.5)
P 		165.4
(-3)
P 		192.9
(-2)
P 		334.4
(3)
P 		169
C 254.4
(-1.3)
P 		221.9
(-2)
P 		178.1
(-3)
A 		256.7
(-1.2)
P 		250.5
(-1.3)
P 		440
(3)
P 		262
avr 214.6
(-3) 		239.4
(-2.2) 		219.3
(-2.8) 		238.7
(-2.2) 		222.6
(-2.7) 		400.7
(3) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 71.3
(2.9)
M 		39.1
(-1.3)
A 		25.7
(-3)
A 		71.8
(3)
P 		46
B 86.6
(0.9)
A 		42.5
(-2.4)
A 		34
(-3)
A 		115.9
(3)
P 		82
C 80.5
(1.2)
A 		50.1
(-3)
A 		57.8
(-1.9)
A 		93.7
(3)
P 		44
avr 79.5
(1.4) 		43.9
(-2.5) 		39.2
(-3) 		93.8
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 35.8
(-3)
P 		82.2
(1.1)
A 		53.1
(-1.5)
P 		74.5
(0.4)
P 		67.7
(-0.2)
P 		104.1
(3)
P 		68
B 67.9
(-1.2)
P 		88.3
(0.3)
P 		57.3
(-2)
P 		43.8
(-3)
P 		78.4
(-0.4)
P 		124.7
(3)
P 		81
C 94.3
(-0.1)
P 		67.7
(-1.7)
P 		45.3
(-3)
A 		51.6
(-2.6)
P 		81.1
(-0.9)
P 		147.3
(3)
P 		102
avr 66
(-1.8) 		79.4
(-0.8) 		51.9
(-3) 		56.6
(-2.6) 		75.7
(-1.1) 		125.4
(3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179580_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17575
Sequence Type Exemplar sequence
Representative Public ID F11C1.2 NCBI
Target Description F11C1.2 /REP_DB=WormBase Gene ID /WP=CE03187 /TR=Q19343 /GB=CAA91026.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077757(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077757 NCBI Caenorhabditis elegans F11C1.2 (F11C1.2) mRNA, complete cds. 11/11 None
SNAP00000035040 ENSEMBL cdna:SNAP chromosome:CEL140:X:12985989:12987125:-1 10/11 None
GENEFINDER00000035047 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12985989:12989127:-1 10/11 None
F11C1.2 ENSEMBL cdna:known chromosome:CEL140:X:12985751:12987138:-1 gene:F11C1.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12985988-12987122(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11C1.2
Entrez Gene 181430 Entrez gene
SwissProt Q19343 EMBL-EBI
WormBase CE31472 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91026 Hypothetical protein F11C1.2 [Caenorhabditis elegans] ref|NP_510158.2| F11C1.2 [Caenorhabditis elegans] 1.0E-83
blast CAA91026 Hypothetical protein F11C1.2 [Caenorhabditis elegans] ref|NP_510158.2| F11C1.2 [Caenorhabditis elegans] 6.0E-82
blast CAA91025 Hypothetical protein F11C1.1 [Caenorhabditis elegans] ref|NP_510159.1| F11C1.1 [Caenorhabditis elegans] 8.0E-55
blast CAE70360 Hypothetical protein CBG16918 [Caenorhabditis briggsae] 2.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR010625 EMBL-EBI CHCH 2.3E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510158.2 1 139-156
F11C1.2 1 139-156
SNAP00000035040 1 140-157
GENEFINDER00000035047 1 251-268
Sequence
Target Sequence 
>C. ELEGANS:179580_AT
taccggaccacctgtcagtgacaggtgccgaccttatgcagatagacccgctcaatagat
tgatgaacaaatttgaagaggcccggacagcaatgctagaaagaatgagcgttccagagc
acattacggtaaatggaagagcgacgctggttccagaagaaaggagagtttttagaacta
cgacgattcccacttcatttgactcatcaaatgtgcaaaacccgtacgaggaagtgaaaa
tgatgcagaaaagaatgattgttctcatgggccggcttggagtacttgaaaaccaaatcg
tcgtccaaaaaagacgtgaaaaaggacttctccttgcattaatagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCGGACCACCTGTCAGTGACAGG 574 647 20 Antisense
CAGTGACAGGTGCCGACCTTATGCA 138 209 35 Antisense
ATGCAGATAGACCCGCTCAATAGAT 584 43 55 Antisense
TGAAGAGGCCCGGACAGCAATGCTA 73 575 93 Antisense
GAGCGTTCCAGAGCACATTACGGTA 169 385 126 Antisense
GGAAGAGCGACGCTGGTTCCAGAAG 332 531 154 Antisense
TTAGAACTACGACGATTCCCACTTC 526 679 191 Antisense
TCAAATGTGCAAAACCCGTACGAGG 60 605 226 Antisense
AGAATGATTGTTCTCATGGGCCGGC 41 75 271 Antisense
CATGGGCCGGCTTGGAGTACTTGAA 421 207 285 Antisense
AAGGACTTCTCCTTGCATTAATAGG 592 159 341 Antisense
Sequence Source Affymetrix Proprietary Database