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[179578_at]

Description Y6E2A.7 /REP_DB=WormBase Gene ID /WP=CE16583 /TR=O45974 /GB=CAA15968.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 27.1
(-2.9)
A 		26.2
(-3)
A 		32.9
(-2.3)
A 		86
(3)
A 		60
B 4.6
(-3)
A 		38
(3)
A 		24.2
(0.5)
A 		37.6
(2.9)
A 		33
C 46.7
(-0.5)
A 		66.7
(1.3)
A 		17.4
(-3)
A 		86.8
(3)
A 		69
avr 26.1
(-2.8) 		43.6
(-0.5) 		24.8
(-3) 		70.1
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 53.6
(-1.4)
A 		43.4
(-3)
A 		74.6
(1.9)
A 		46.6
(-2.5)
A 		52.5
(-1.6)
A 		81.6
(3)
A 		38
B 44.2
(-1)
A 		56.2
(1.2)
A 		33.1
(-3)
A 		40.1
(-1.7)
A 		45.2
(-0.8)
A 		66
(3)
P 		33
C 40.2
(-1.1)
A 		69.1
(3)
M 		29.9
(-2.6)
A 		29.7
(-2.7)
A 		27.3
(-3)
A 		62
(2)
P 		42
avr 46
(-1.6) 		56.2
(0.4) 		45.9
(-1.6) 		38.8
(-3) 		41.7
(-2.4) 		69.9
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 9.9
(0.7)
A 		5.7
(-3)
A 		8.6
(-0.5)
A 		12.6
(3)
A 		7
B 1.5
(-3)
A 		9.4
(3)
A 		5.6
(0.1)
A 		8
(1.9)
A 		8
C 15.5
(1.3)
A 		19.2
(3)
A 		6.1
(-3)
A 		14.6
(0.9)
A 		13
avr 9
(-0.3) 		11.4
(2.6) 		6.8
(-3) 		11.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 9.9
(-3)
A 		15.4
(0.3)
A 		16.2
(0.8)
A 		11.8
(-1.9)
A 		15.8
(0.5)
A 		19.9
(3)
A 		10
B 15.4
(-0.3)
A 		18.7
(0.9)
A 		8
(-3)
A 		10.6
(-2.1)
A 		18.4
(0.8)
A 		24.6
(3)
P 		17
C 14.9
(0.5)
A 		21.1
(3)
M 		7.6
(-2.4)
A 		6
(-3)
A 		8.8
(-1.9)
A 		20.7
(2.8)
P 		15
avr 13.4
(-1.1) 		18.4
(1.4) 		10.6
(-2.5) 		9.5
(-3) 		14.3
(-0.6) 		21.7
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179578_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12802
Sequence Type Exemplar sequence
Representative Public ID Y6E2A.7 NCBI
Target Description Y6E2A.7 /REP_DB=WormBase Gene ID /WP=CE16583 /TR=O45974 /GB=CAA15968.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074511(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074511 NCBI Caenorhabditis elegans Y6E2A.7 (Y6E2A.7) mRNA, complete cds. 11/11 None
SNAP00000013592 ENSEMBL cdna:SNAP chromosome:CEL140:V:15722464:15723876:1 9/11 None
GENEFINDER00000013600 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15722464:15726801:1 11/11 None
Y6E2A.7 ENSEMBL cdna:known chromosome:CEL140:V:15722428:15723876:1 gene:Y6E2A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15722427-15723876(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y6E2A.7
Entrez Gene 189378 Entrez gene
SwissProt O45974 EMBL-EBI
WormBase CE16583 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA15968 Hypothetical protein Y6E2A.7 [Caenorhabditis elegans] ref|NP_506912.1| Y6E2A.7 [Caenorhabditis elegans] 0.0
blast CAA15967 Hypothetical protein Y6E2A.6 [Caenorhabditis elegans] ref|NP_506913.1| Serpentine Receptor, class H family member (srh-140) [Caenorhabditis elegans] 1.0E-173
blast CAA15968 Hypothetical protein Y6E2A.7 [Caenorhabditis elegans] ref|NP_506912.1| Y6E2A.7 [Caenorhabditis elegans] 1.0E-103
blast CAA16167 Hypothetical protein F57E7.3 [Caenorhabditis elegans] ref|NP_507171.1| Serpentine Receptor, class H family member (srh-139) [Caenorhabditis elegans] 3.0E-87
Protein Domains
Database ID Description E-Value
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 2.0
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.3E-107
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.1E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000013600 7 406-428,441-463,483-505,526-548,584-606,619-641,701-723
Sequence
Target Sequence 
>C. ELEGANS:179578_AT
acatcagcggacaggtagacacaattggtatccttcaaaatcgcttagagagcggcctag
aaaaattaaagaatcttcggtggaagcttcgatagtgccaaaatctataaatcactctga
aattcgaagatgtcgctctgctgagcagctctcgtgcttttcccaaacttctcaggaagt
caagaattttgaaactaaaccagacgacctggaggcacaggaattaattatcaaagaaac
aagaggttgcagtactgtgtctgtaacgcttcaaaactctgaagcccctgagaatattct
ggaagatcgtatagagcaagaaaatcttagaaaacttggagaaacaagaacattccgagc
tttaagtatcgaatccgtcgagtcggatgtaactgataattcatttgaaatgaagttgaa
ggcacaagaagcagaaggtgctgcaaaacttctggaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCAGCGGACAGGTAGACACAAT 576 103 579 Antisense
GGTATCCTTCAAAATCGCTTAGAGA 264 505 605 Antisense
TCGGTGGAAGCTTCGATAGTGCCAA 132 607 655 Antisense
AAGATGTCGCTCTGCTGAGCAGCTC 44 155 705 Antisense
TGCTTTTCCCAAACTTCTCAGGAAG 12 579 733 Antisense
AAACCAGACGACCTGGAGGCACAGG 533 125 775 Antisense
GAGGTTGCAGTACTGTGTCTGTAAC 441 403 821 Antisense
GTGTCTGTAACGCTTCAAAACTCTG 176 483 835 Antisense
AAAACTCTGAAGCCCCTGAGAATAT 407 131 851 Antisense
GAGCTTTAAGTATCGAATCCGTCGA 701 371 935 Antisense
AAGGTGCTGCAAAACTTCTGGAAGC 572 159 1013 Antisense
Sequence Source Affymetrix Proprietary Database