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[179577_at]

Description F55C9.4 /REP_DB=WormBase Gene ID /WP=CE18736 /TR=Q9XUZ4 /GB=CAB04468.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 34.8
(-2.8)
A 		30
(-3)
A 		57.4
(-2)
P 		196.7
(3)
P 		167
B 69.2
(0.2)
A 		77.2
(0.7)
A 		23.1
(-3)
A 		110.1
(3)
A 		87
C 48.5
(-2.7)
A 		36.9
(-3)
A 		39.2
(-2.9)
A 		243.5
(3)
P 		207
avr 50.8
(-2.5) 		48
(-2.7) 		39.9
(-3) 		183.4
(3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 36.6
(-3)
A 		36.8
(-3)
A 		58.8
(0.5)
A 		49.7
(-0.9)
A 		67.4
(1.9)
A 		74.7
(3)
A 		38
B 56.4
(-2.7)
A 		72.4
(-1)
M 		57.4
(-2.6)
A 		53.4
(-3)
A 		76.9
(-0.5)
P 		109.2
(3)
P 		56
C 57.9
(-0.2)
A 		89
(3)
A 		80.8
(2.2)
A 		30.1
(-3)
A 		37.3
(-2.3)
A 		67.1
(0.8)
P 		59
avr 50.3
(-2.1) 		66.1
(0.3) 		65.7
(0.3) 		44.4
(-3) 		60.5
(-0.5) 		83.7
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 12.7
(-1.3)
A 		6.5
(-3)
A 		15
(-0.7)
P 		28.8
(3)
P 		22
B 22.1
(2.5)
A 		19.1
(1.5)
A 		5.4
(-3)
A 		23.5
(3)
A 		18
C 16.1
(-1.9)
A 		10.6
(-3)
A 		13.7
(-2.4)
A 		41.1
(3)
P 		31
avr 17
(-1.3) 		12.1
(-2.8) 		11.4
(-3) 		31.1
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 6.8
(-3)
A 		13.1
(-0.2)
A 		12.8
(-0.3)
A 		12.6
(-0.4)
A 		20.3
(3)
A 		18.2
(2.1)
A 		14
B 19.6
(-1.7)
A 		24.1
(-0.7)
M 		13.9
(-3)
A 		14.1
(-3)
A 		31.2
(0.9)
P 		40.7
(3)
P 		27
C 21.5
(1.4)
A 		27.1
(3)
A 		20.6
(1.2)
A 		6
(-3)
A 		12.1
(-1.3)
A 		22.5
(1.7)
P 		21
avr 16
(-1.1) 		21.4
(0.9) 		15.8
(-1.2) 		10.9
(-3) 		21.2
(0.8) 		27.1
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179577_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12692
Sequence Type Exemplar sequence
Representative Public ID F55C9.4 NCBI
Target Description F55C9.4 /REP_DB=WormBase Gene ID /WP=CE18736 /TR=Q9XUZ4 /GB=CAB04468.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075352(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075352 NCBI Caenorhabditis elegans F55C9.4 (F55C9.4) mRNA, complete cds. 11/11 None
SNAP00000026274 ENSEMBL cdna:SNAP chromosome:CEL140:V:19291422:19292462:1 11/11 None
GENEFINDER00000026284 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19291422:19292462:1 11/11 None
F55C9.4 ENSEMBL cdna:known chromosome:CEL140:V:19291422:19292462:1 gene:F55C9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19291421-19292462(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55C9.4
Entrez Gene 186292 Entrez gene
SwissProt Q9XUZ4 EMBL-EBI
WormBase CE18736 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04468 Hypothetical protein F55C9.4 [Caenorhabditis elegans] ref|NP_507753.1| F55C9.4 [Caenorhabditis elegans] 1.0E-160
blast CAB04475 Hypothetical protein F55C9.7 [Caenorhabditis elegans] ref|NP_507756.1| F55C9.7 [Caenorhabditis elegans] 3.0E-17
blast CAB03963 Hypothetical protein C43D7.2 [Caenorhabditis elegans] ref|NP_507766.1| C43D7.2 [Caenorhabditis elegans] 1.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.7E-8
Sequence
Target Sequence 
>C. ELEGANS:179577_AT
ataaacactgctctttgcattctccccacttataatttgctttgtaaaatcacaaaactt
catcacaactttagaaaactgtataacgagctggatggtcttttatttttccgtttggat
ctgaaccttggaaattcgccagctctcaatccagagtggcaatcgtggctatggaagttt
gttcagaaatactctgataatgggcttattatttatacaactgcaaatctcccaaacggc
aatatgtatcatcaaattctgggatcgtctcgtagaaatgtgcaagtacagacacgatgc
acactttccgatttgcttgctatgagatgtaccaatgtacttttatgcacacctatctat
ccggaggaattcaatttgttcctgaaacactggatcaaaggagcaaatgaagtcgttgaa
acgctctatgtcgagatcgaatatgtaaatgagttcactgacctgatattcagggatatc
aaatgttggaacacaccaaaacaggccgcaaaaagaagaagaagaattaaaataagaaag
gatatctacagctgtgccggagttagggctactttggcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAAACACTGCTCTTTGCATTCTCC 338 25 262 Antisense
CATTCTCCCCACTTATAATTTGCTT 285 217 279 Antisense
TTTCCGTTTGGATCTGAACCTTGGA 150 653 369 Antisense
TGGAAATTCGCCAGCTCTCAATCCA 696 547 390 Antisense
TACAACTGCAAATCTCCCAAACGGC 182 641 477 Antisense
TCAAATTCTGGGATCGTCTCGTAGA 510 627 513 Antisense
GATGCACACTTTCCGATTTGCTTGC 282 413 557 Antisense
TTTATGCACACCTATCTATCCGGAG 181 675 603 Antisense
GGAACACACCAAAACAGGCCGCAAA 123 529 749 Antisense
GATATCTACAGCTGTGCCGGAGTTA 229 425 802 Antisense
TGCCGGAGTTAGGGCTACTTTGGCG 295 553 816 Antisense
Sequence Source Affymetrix Proprietary Database