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[179575_at]

Description T23F1.4 /REP_DB=WormBase Gene ID /WP=CE14076 /TR=O18121 /GB=CAB03407.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 17      6grp_cgc > 89      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 5.1
(-3)
A 		31.6
(0.6)
A 		5.7
(-2.9)
A 		49.8
(3)
A 		45
B 4.8
(-2.5)
A 		3
(-3)
A 		24.9
(3)
A 		7.9
(-1.7)
A 		22
C 8
(-2.8)
A 		27
(-1.1)
A 		5.7
(-3)
A 		74
(3)
A 		68
avr 6
(-3) 		20.5
(-0.7) 		12.1
(-2) 		43.9
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.7
(-3)
A 		10.4
(-0.6)
A 		7.1
(-1.6)
A 		3.8
(-2.7)
A 		22
(3)
A 		6.8
(-1.7)
A 		19
B 2.5
(-2.8)
A 		4.3
(-2.3)
A 		2
(-3)
A 		7.9
(-1.1)
A 		7.7
(-1.2)
A 		20.6
(3)
A 		19
C 4.1
(-1.3)
A 		8.7
(3)
A 		2.3
(-3)
A 		3.6
(-1.8)
A 		3.5
(-1.9)
A 		2.7
(-2.6)
A 		6
avr 3.1
(-3) 		7.8
(0.5) 		3.8
(-2.5) 		5.1
(-1.5) 		11.1
(3) 		10
(2.2) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.9
(-2.6)
A 		6.9
(2.6)
A 		1.5
(-3)
A 		7.3
(3)
A 		6
B 1.5
(-2.1)
A 		0.7
(-3)
A 		5.8
(3)
A 		1.7
(-1.8)
A 		5
C 2.6
(-2.7)
A 		7.8
(0.3)
A 		2
(-3)
A 		12.5
(3)
A 		11
avr 2
(-3) 		5.1
(0.6) 		3.1
(-1.7) 		7.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.5
(-3)
A 		3.7
(0.1)
A 		1.6
(-1.9)
A 		1
(-2.5)
A 		6.6
(3)
A 		1.7
(-1.8)
A 		6
B 0.9
(-2.7)
A 		1.4
(-2.3)
A 		0.5
(-3)
A 		2.1
(-1.7)
A 		3.1
(-0.8)
A 		7.7
(3)
A 		7
C 1.5
(-0.3)
A 		2.6
(3)
A 		0.6
(-3)
A 		0.7
(-2.7)
A 		1.1
(-1.5)
A 		0.9
(-2.1)
A 		2
avr 1
(-2.8) 		2.6
(0.8) 		0.9
(-3) 		1.3
(-2.1) 		3.6
(3) 		3.4
(2.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179575_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13433
Sequence Type Exemplar sequence
Representative Public ID T23F1.4 NCBI
Target Description T23F1.4 /REP_DB=WormBase Gene ID /WP=CE14076 /TR=O18121 /GB=CAB03407.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074446(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074446 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-71) (str-71) mRNA, complete cds. 11/11 None
SNAP00000033148 ENSEMBL cdna:SNAP chromosome:CEL140:V:15460541:15461773:-1 11/11 None
T23F1.4 ENSEMBL cdna:known chromosome:CEL140:V:15460541:15461773:-1 gene:T23F1.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000033153 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15460540-15461773(-) 99.26 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-71
Ensembl T23F1.4
Entrez Gene 188801 Entrez gene
SwissProt O18121 EMBL-EBI
WormBase CE14076 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03407 Hypothetical protein T23F1.4 [Caenorhabditis elegans] ref|NP_506847.1| Seven TM Receptor family member (str-71) [Caenorhabditis elegans] 0.0
blast CAB03408 Hypothetical protein T23F1.3 [Caenorhabditis elegans] ref|NP_506846.1| T23F1.3 [Caenorhabditis elegans] 1.0E-109
blast AAD14692 Seven tm receptor protein 76 [Caenorhabditis elegans] ref|NP_503687.1| Seven TM Receptor family member (str-76) [Caenorhabditis elegans] ref|NP_503660.1| Seven TM Receptor family member (str-265) [Caenorhabditis elegans] gb|AAK68413.1| Hypothetical protein Y19D10A.13 [Caenorhabditis elegans] 1.0E-102
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506847.1 7 13-31,43-65,85-107,128-150,196-218,245-267,282-304
T23F1.4 7 13-31,43-65,85-107,128-150,196-218,245-267,282-304
SNAP00000033148 7 13-31,43-65,85-107,128-150,196-218,245-267,282-304
Sequence
Target Sequence 
>C. ELEGANS:179575_AT
tttatcgccactgttgcttgtcaaatgtcagatgggcaaagaaatttgacggactcggat
gtttcctctggatggggtacccattgatccccggcgcgatttatgccagctcattttatt
ggttctgtttgcctgatgaatactcggatgattgtgtgagagaaacaattcttaaaaact
atgctttggcaactgcggacgttgctagattcatggttgctccatacacatcagaaggct
cctggcgactcaataactcatttttccttctctccggcgtggtatccatatggcttcact
actccgtaattctttactgtggagtcaaaatgcacctgaacatgaaagaagaactcaaaa
agttttcggttgtcaaccgaaaacttcagcgtcagtttttcaaggccctggtgtttcaga
gtattggaccaacagttttccttgtgctaccggttgcaccaaccatcattgctcctctgg
tagctccgtatttaagcctagaaatcaactggcaaactggatggctatactcgattgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTATCGCCACTGTTGCTTGTCAAA 41 675 341 Antisense
TTGACGGACTCGGATGTTTCCTCTG 291 701 386 Antisense
CGGCGCGATTTATGCCAGCTCATTT 341 239 432 Antisense
ACACATCAGAAGGCTCCTGGCGACT 291 111 566 Antisense
TCAATAACTCATTTTTCCTTCTCTC 618 633 590 Antisense
GGCGTGGTATCCATATGGCTTCACT 440 541 616 Antisense
GCTTCACTACTCCGTAATTCTTTAC 363 303 633 Antisense
TTCAGCGTCAGTTTTTCAAGGCCCT 338 685 725 Antisense
TGGACCAACAGTTTTCCTTGTGCTA 343 549 765 Antisense
CTCCTCTGGTAGCTCCGTATTTAAG 479 217 812 Antisense
AACTGGATGGCTATACTCGATTGTC 502 143 855 Antisense
Sequence Source Affymetrix Proprietary Database