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[179574_at]

Description T04F8.7 /REP_DB=WormBase Gene ID /WP=CE03619 /TR=Q22166 /GB=CAA91481.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 45      6grp_total > 14      4grp_total > 31      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 526
1 2 3 4 range
A 695.8
(3)
P 		305.5
(-2.5)
A 		272.3
(-3)
A 		469.1
(-0.2)
P 		424
B 675.3
(3)
P 		356.1
(-1.3)
A 		225.5
(-3)
A 		607.5
(2.1)
P 		450
C 751.8
(3)
P 		271.5
(-2.9)
A 		261.5
(-3)
A 		451.9
(-0.7)
P 		490
avr 707.6
(3) 		311
(-2.2) 		253.1
(-3) 		509.5
(0.4) 		455

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 294.3
(-3)
P 		400.6
(3)
A 		342.8
(-0.3)
P 		338.2
(-0.5)
P 		320.5
(-1.5)
P 		344
(-0.2)
P 		106
B 492.1
(3)
P 		422.5
(0.7)
M 		439.1
(1.2)
P 		432.9
(1)
P 		310.4
(-3)
P 		366
(-1.2)
P 		182
C 434.6
(2.9)
A 		391.7
(-0.2)
P 		354.2
(-3)
A 		436
(3)
P 		414.5
(1.4)
A 		417
(1.6)
P 		82
avr 407
(3) 		404.9
(2.8) 		378.7
(0.1) 		402.4
(2.5) 		348.5
(-3) 		375.7
(-0.2) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 253.3
(3)
P 		66.3
(-3)
A 		71.2
(-2.8)
A 		68.7
(-2.9)
P 		187
B 215.3
(3)
P 		88
(-1.7)
A 		52.3
(-3)
A 		129.5
(-0.2)
P 		163
C 248.9
(3)
P 		78.1
(-2.9)
A 		91.1
(-2.5)
A 		76.2
(-3)
P 		173
avr 239.2
(3) 		77.5
(-2.8) 		71.5
(-3) 		91.5
(-2.3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 54.2
(-3)
P 		142.5
(3)
A 		74.7
(-1.6)
P 		85.8
(-0.9)
P 		96.7
(-0.1)
P 		83.8
(-1)
P 		88
B 171.2
(3)
P 		140.6
(0.2)
M 		106.6
(-3)
P 		114.7
(-2.2)
P 		126.1
(-1.2)
P 		136.5
(-0.2)
P 		65
C 161.1
(3)
A 		119.5
(-0.4)
P 		90.1
(-2.8)
A 		87.7
(-3)
P 		134.1
(0.8)
A 		139.6
(1.2)
P 		73
avr 128.8
(2.3) 		134.2
(3) 		90.5
(-3) 		96.1
(-2.2) 		119
(0.9) 		120
(1.1) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179574_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17056
Sequence Type Exemplar sequence
Representative Public ID T04F8.7 NCBI
Target Description T04F8.7 /REP_DB=WormBase Gene ID /WP=CE03619 /TR=Q22166 /GB=CAA91481.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077550(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077550 NCBI Caenorhabditis elegans T04F8.7 (T04F8.7) mRNA, complete cds. 11/11 None
GENEFINDER00000020414 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11677527:11680819:-1 11/11 None
T04F8.7 ENSEMBL cdna:known chromosome:CEL140:X:11677650:11680819:-1 gene:T04F8.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020406 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11677649-11680819(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04F8.7
Entrez Gene 188067 Entrez gene
SwissProt Q22166 EMBL-EBI
WormBase CE03619 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91481 Hypothetical protein T04F8.7 [Caenorhabditis elegans] ref|NP_509951.1| T04F8.7 [Caenorhabditis elegans] 1.0E-173
blast CAA91481 Hypothetical protein T04F8.7 [Caenorhabditis elegans] ref|NP_509951.1| T04F8.7 [Caenorhabditis elegans] 1.0E-145
blast CAE70596 Hypothetical protein CBG17269 [Caenorhabditis briggsae] 1.0E-108
blast CAE70596 Hypothetical protein CBG17269 [Caenorhabditis briggsae] 1.0E-91
Sequence
Target Sequence 
>C. ELEGANS:179574_AT
agattggtgtaccagtgcttccgggaatcgcttcagcgatacttccaatttcaagtcttg
aactagcagcagcaccagtagcaaccgatcaaaacagagcatacctccgtcatttagaaa
atcacaaaaagtttgacactctccgcggtgaccgtggaatcgatgattgtgaaatttgcc
aaattatgaagaaacaactagaagcagaaaaacaagactctggacatcattcctgggaaa
aaccacaatatgctggacatcacgtagcaaatcaacactcaagttcgggtagtggaaaga
aaagaggagatgtattgtggtatgacgaaatttgccgcaaactgtcgttttttaattgtg
aagagaacttcggacttttaaatgcgaaaaaccgcgacatatttcggattgaggaacaac
cagagcccgaaccatatttccgttcagtgagtgctcgtgctcgccataactacgaaaaac
accgagacgttgatgtcagcatccgagccatggagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATTGGTGTACCAGTGCTTCCGGG 680 63 407 Antisense
TCGCTTCAGCGATACTTCCAATTTC 257 601 434 Antisense
GTCTTGAACTAGCAGCAGCACCAGT 67 469 461 Antisense
AGAGCATACCTCCGTCATTTAGAAA 708 69 502 Antisense
ACAAAAAGTTTGACACTCTCCGCGG 700 111 530 Antisense
CTCTCCGCGGTGACCGTGGAATCGA 494 231 545 Antisense
AAGACTCTGGACATCATTCCTGGGA 667 153 620 Antisense
TTGAGGAACAACCAGAGCCCGAACC 209 685 815 Antisense
AGCCCGAACCATATTTCCGTTCAGT 259 83 830 Antisense
TTTCCGTTCAGTGAGTGCTCGTGCT 390 667 843 Antisense
ATGTCAGCATCCGAGCCATGGAGCA 66 49 899 Antisense
Sequence Source Affymetrix Proprietary Database