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[179573_at]

Description F38B2.2 /REP_DB=WormBase Gene ID /WP=CE02216 /TR=Q20138 /GB=CAA90362.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 39      4grp_highest_8_8 > 63      4grp_high_8_8 > 27      6grp_highest_nonorm > 70      6grp_total > 38      4grp_total > 37      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 682
1 2 3 4 range
A 913.5
(1.9)
P 		1005.3
(3)
P 		517.3
(-3)
P 		919.9
(2)
P 		488
B 1078.5
(3)
P 		928.5
(1.5)
P 		487.8
(-3)
P 		848.1
(0.7)
P 		591
C 940.9
(3)
P 		846.8
(2)
P 		396.9
(-3)
P 		700.8
(0.4)
P 		544
avr 977.6
(3) 		926.9
(2.4) 		467.3
(-3) 		822.9
(1.2) 		510

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 594
1 2 3 4 5 6 range
A 716.6
(3)
P 		249.1
(-1.9)
P 		143.7
(-3)
P 		141
(-3)
P 		246.7
(-1.9)
P 		360.9
(-0.7)
P 		576
B 521.9
(3)
P 		273.1
(-0.8)
P 		130.9
(-3)
P 		147
(-2.8)
P 		276.6
(-0.8)
P 		355.1
(0.4)
P 		391
C 485.2
(3)
P 		280.1
(-0.4)
P 		172.4
(-2.2)
P 		123
(-3)
P 		256
(-0.8)
P 		464.5
(2.7)
P 		362
avr 574.6
(3) 		267.4
(-1.2) 		149
(-2.8) 		137
(-3) 		259.8
(-1.3) 		393.5
(0.5) 		438
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 332.6
(3)
P 		218.2
(-0.5)
P 		135.2
(-3)
P 		134.7
(-3)
P 		198
B 343.9
(3)
P 		229.3
(0)
P 		113
(-3)
P 		180.7
(-1.2)
P 		231
C 311.5
(3)
P 		243.5
(0.9)
P 		138.3
(-2.4)
P 		118.2
(-3)
P 		193
avr 329.3
(3) 		230.3
(0) 		128.8
(-3) 		144.5
(-2.5) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 132.1
(3)
P 		88.6
(0.4)
P 		31.3
(-3)
P 		35.8
(-2.7)
P 		74.4
(-0.4)
P 		87.9
(0.4)
P 		101
B 181.6
(3)
P 		90.9
(-0.6)
P 		31.8
(-3)
P 		38.9
(-2.7)
P 		112.4
(0.2)
P 		132.4
(1)
P 		150
C 179.9
(3)
P 		85.5
(-0.6)
P 		43.9
(-2.3)
P 		24.7
(-3)
P 		82.8
(-0.8)
P 		155.5
(2.1)
P 		155
avr 164.5
(3) 		88.3
(-0.5) 		35.7
(-2.9) 		33.1
(-3) 		89.9
(-0.4) 		125.3
(1.2) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179573_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15990
Sequence Type Exemplar sequence
Representative Public ID F38B2.2 NCBI
Target Description F38B2.2 /REP_DB=WormBase Gene ID /WP=CE02216 /TR=Q20138 /GB=CAA90362.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077481(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077481 NCBI Caenorhabditis elegans F38B2.2 (F38B2.2) mRNA, complete cds. 11/11 None
SNAP00000008607 ENSEMBL cdna:SNAP chromosome:CEL140:X:11278616:11279291:-1 11/11 None
GENEFINDER00000008626 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11278616:11279291:-1 11/11 None
F38B2.2 ENSEMBL cdna:known chromosome:CEL140:X:11278616:11279291:-1 gene:F38B2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11278615-11279291(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38B2.2
Entrez Gene 185449 Entrez gene
SwissProt Q20138 EMBL-EBI
WormBase CE02216 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90362 Hypothetical protein F38B2.2 [Caenorhabditis elegans] ref|NP_509882.1| F38B2.2 [Caenorhabditis elegans] 1.0E-101
blast CAE70671 Hypothetical protein CBG17380 [Caenorhabditis briggsae] 2.0E-34
blast CAA94146 Hypothetical protein K02D3.1 [Caenorhabditis elegans] ref|NP_510292.1| K02D3.1 [Caenorhabditis elegans] 5.0E-16
Sequence
Target Sequence 
>C. ELEGANS:179573_AT
cagtaacaaaagcctgccctgcagactactactactgtccaaaacgagaatacgggattt
tctctgggacccgatgggagtgggatgtggatgctatcataaaatcggaaatgggagaaa
tattcaggaggagccgtttcctcaacaaggacactctcaaaggattgcaggacagttttt
gctgttcggaaggaccgtgtctcacgcggtgtggaatttatccaaaaaccgaaatagacc
ttatccaaaagttcccatccaacgcaatggacattctcaatctgaatctcccacaaatcg
aggtccatcgtccagcggtcatggaatggatgaacacgatcaagcagaaatccgcacaaa
agaacagctacccggctgaaatcgaggattttttcgacactgtgcacgccaaccaagata
tc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTAACAAAAGCCTGCCCTGCAGA 507 207 86 Antisense
CCCTGCAGACTACTACTACTGTCCA 112 259 102 Antisense
GGATTTTCTCTGGGACCCGATGGGA 487 507 140 Antisense
GGAGCCGTTTCCTCAACAAGGACAC 588 511 215 Antisense
TGTTCGGAAGGACCGTGTCTCACGC 607 561 268 Antisense
TTATCCAAAAGTTCCCATCCAACGC 84 679 326 Antisense
TCTCAATCTGAATCTCCCACAAATC 604 613 360 Antisense
CACAAATCGAGGTCCATCGTCCAGC 228 193 377 Antisense
GCTACCCGGCTGAAATCGAGGATTT 337 303 452 Antisense
GGATTTTTTCGACACTGTGCACGCC 69 509 471 Antisense
CACTGTGCACGCCAACCAAGATATC 126 199 483 Antisense
Sequence Source Affymetrix Proprietary Database