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[179572_at]

Description C06H5.7 /REP_DB=WormBase Gene ID /WP=CE23523 /TR=Q9U3R3 /GB=CAB62778.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 59      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 76      6grp_total > 79      4grp_total > 0      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1176
1 2 3 4 range
A 955.5
(-1.7)
P 		787.4
(-3)
P 		1073.3
(-0.8)
P 		1560.1
(3)
P 		773
B 956.4
(-1.7)
P 		710.3
(-3)
P 		1049.8
(-1.3)
P 		1886.7
(3)
P 		1176
C 960.6
(-1.6)
P 		790.2
(-3)
P 		1086.2
(-0.5)
P 		1513.2
(3)
P 		723
avr 957.5
(-1.7) 		762.6
(-3) 		1069.8
(-0.9) 		1653.3
(3) 		891

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 652
1 2 3 4 5 6 range
A 978.3
(-1.8)
P 		1309.4
(3)
P 		897.9
(-3)
P 		980.3
(-1.8)
P 		1159.5
(0.8)
P 		1260.5
(2.3)
P 		412
B 1241.4
(-0.1)
P 		1285.6
(0.6)
P 		1061.4
(-3)
P 		1098.5
(-2.4)
P 		1298.7
(0.8)
P 		1431.6
(3)
P 		370
C 1212.4
(2.5)
P 		1236.4
(2.8)
P 		909.3
(-1.3)
P 		779.3
(-3)
P 		1053.6
(0.5)
P 		1249.4
(3)
P 		470
avr 1144
(0.2) 		1277.1
(2.4) 		956.2
(-2.9) 		952.7
(-3) 		1170.6
(0.6) 		1313.8
(3) 		361
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 347.9
(3)
P 		170.9
(-3)
P 		280.6
(0.7)
P 		228.4
(-1.1)
P 		177
B 305
(0.4)
P 		175.4
(-3)
P 		243.3
(-1.2)
P 		402.1
(3)
P 		227
C 318
(0.6)
P 		227.2
(-3)
P 		378.6
(3)
P 		255.1
(-1.9)
P 		151
avr 323.6
(3) 		191.2
(-3) 		300.8
(2) 		295.2
(1.7) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 377
1 2 3 4 5 6 range
A 180.3
(-3)
P 		465.7
(3)
P 		195.5
(-2.7)
P 		248.6
(-1.6)
P 		349.9
(0.6)
P 		306.9
(-0.3)
P 		285
B 431.9
(0.8)
P 		427.9
(0.7)
P 		257.7
(-3)
P 		291
(-2.3)
P 		527.6
(2.9)
P 		533.8
(3)
P 		276
C 449.4
(3)
P 		377.3
(1.5)
P 		231.4
(-1.5)
P 		156.7
(-3)
P 		340.9
(0.8)
P 		418.3
(2.4)
P 		293
avr 353.9
(0.9) 		423.6
(3) 		228.2
(-3) 		232.1
(-2.9) 		406.1
(2.5) 		419.7
(2.9) 		195
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179572_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13034
Sequence Type Exemplar sequence
Representative Public ID C06H5.7 NCBI
Target Description C06H5.7 /REP_DB=WormBase Gene ID /WP=CE23523 /TR=Q9U3R3 /GB=CAB62778.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075110(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075110 NCBI Caenorhabditis elegans C06H5.7 (C06H5.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000016173 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17912900:17919658:1 11/11 None
C06H5.7.2 ENSEMBL cdna:known chromosome:CEL140:V:17912893:17919658:1 gene:C06H5.7 11/11 None
C06H5.7.1 ENSEMBL cdna:known chromosome:CEL140:V:17912895:17919815:1 gene:C06H5.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016169 2/11 Cross Hyb Matching Probes None
SNAP00000016170 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17912899-17916970(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06H5.7
Entrez Gene 259679 Entrez gene
SwissProt Q9U3R3 EMBL-EBI
WormBase CE31877 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB62778 Hypothetical protein C06H5.7 [Caenorhabditis elegans] ref|NP_507511.2| C06H5.7 [Caenorhabditis elegans] dbj|BAC66472.1| L-3,4-dihydroxyphenylalanine receptor [Caenorhabditis elegans] 0.0
blast CAE61704 Hypothetical protein CBG05653 [Caenorhabditis briggsae] 9.0E-87
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507511.2 7 37-59,80-102,117-139,152-174,205-224,256-278,293-315
C06H5.7.2 7 37-59,80-102,117-139,152-174,205-224,256-278,293-315
C06H5.7.1 7 37-59,80-102,117-139,152-174,205-224,256-278,293-315
GENEFINDER00000016173 7 37-59,80-102,117-139,152-174,205-224,256-278,293-315
Sequence
Target Sequence 
>C. ELEGANS:179572_AT
aaccaacgtacagattgcttcttcaatctgacaacacccgaacgcatcgacctttttcgg
cgtcgccaagctcttcgggtggagcatgtattccgtactttctatggatgggcaatgctt
ccattagccatatgtggagcaattgccactattgtattcattatttgttgttataaggcg
ataaaaacccggcgtgtatctcgaaaatgttatgctcttctcatgaatcgtgcaatcgga
gatgctctcacgtgttgttcggcgttggtgacgtgtacatatgtgctgacttggcatgac
ataaaccgcgacatggtggtagtcatcgagtcgtttttcatcggaagtttctggtcagca
atggtgtcctattgttccttatccgtactgaaattgtttgccgtgtggaaaccgtttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCAACGTACAGATTGCTTCTTCA 261 147 22 Antisense
TGCTTCTTCAATCTGACAACACCCG 563 579 37 Antisense
TCGCCAAGCTCTTCGGGTGGAGCAT 160 597 84 Antisense
GATGGGCAATGCTTCCATTAGCCAT 344 407 128 Antisense
AAACCCGGCGTGTATCTCGAAAATG 689 125 206 Antisense
ATGTTATGCTCTTCTCATGAATCGT 660 47 228 Antisense
GTTGTTCGGCGTTGGTGACGTGTAC 131 437 275 Antisense
GTCATCGAGTCGTTTTTCATCGGAA 114 467 343 Antisense
GTTTCTGGTCAGCAATGGTGTCCTA 97 451 368 Antisense
CCTATTGTTCCTTATCCGTACTGAA 618 267 389 Antisense
GTTTGCCGTGTGGAAACCGTTTCAT 267 447 417 Antisense
Sequence Source Affymetrix Proprietary Database