[Home] | [Total List]

[179570_at]

Description F11E6.4 /REP_DB=WormBase Gene ID /WP=CE19784 /TR=Q9XVQ8 /GB=CAB02922.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      6grp_highest_nonorm > 71      6grp_total > 71      4grp_total > 33      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 34.5
(-3)
A 		129.3
(3)
P 		100.5
(1.2)
P 		95.8
(0.9)
A 		95
B 51.4
(-3)
A 		89.9
(0.8)
P 		111.6
(3)
P 		61.6
(-2)
A 		60
C 16.7
(-3)
A 		104.9
(1.2)
P 		121.5
(2)
P 		143.7
(3)
P 		127
avr 34.2
(-3) 		108
(2.8) 		111.2
(3) 		100.4
(2.2) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 611
1 2 3 4 5 6 range
A 216
(-2)
P 		198.2
(-2.1)
P 		486.1
(0.8)
P 		708.1
(3)
P 		246.3
(-1.7)
P 		113.2
(-3)
P 		595
B 215.9
(-1.5)
P 		339.8
(0.1)
P 		467.4
(1.7)
P 		569.4
(3)
P 		303.3
(-0.4)
P 		102
(-3)
P 		467
C 154.3
(-2.4)
P 		321.4
(-0.8)
P 		455.3
(0.5)
P 		702.4
(3)
P 		240.4
(-1.6)
P 		97.6
(-3)
P 		605
avr 195.4
(-2) 		286.5
(-1) 		469.6
(0.9) 		660
(3) 		263.3
(-1.3) 		104.3
(-3) 		556
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 12.6
(-3)
A 		28.1
(3)
P 		26.3
(2.3)
P 		14
(-2.5)
A 		16
B 16.4
(-1.5)
A 		22.2
(1.3)
P 		25.9
(3)
P 		13.1
(-3)
A 		13
C 5.5
(-3)
A 		30.2
(1)
P 		42.3
(3)
P 		24.2
(0)
P 		37
avr 11.5
(-3) 		26.8
(1.6) 		31.5
(3) 		17.1
(-1.3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 39.8
(-2.5)
P 		70.5
(-1.3)
P 		105.9
(0.1)
P 		179.6
(3)
P 		74.3
(-1.2)
P 		27.6
(-3)
P 		152
B 75.1
(-1)
P 		113.1
(1)
P 		113.5
(1)
P 		150.8
(3)
P 		123.2
(1.5)
P 		38
(-3)
P 		113
C 57.2
(-1.6)
P 		98.1
(0.6)
P 		115.9
(1.6)
P 		141.2
(3)
P 		77.8
(-0.5)
P 		32.7
(-3)
P 		109
avr 57.4
(-1.8) 		93.9
(-0.1) 		111.8
(0.8) 		157.2
(3) 		91.8
(-0.2) 		32.8
(-3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179570_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9898
Sequence Type Exemplar sequence
Representative Public ID F11E6.4 NCBI
Target Description F11E6.4 /REP_DB=WormBase Gene ID /WP=CE19784 /TR=Q9XVQ8 /GB=CAB02922.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070714(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070714 NCBI Caenorhabditis elegans F11E6.4 (F11E6.4) mRNA, complete cds. 11/11 None
GENEFINDER00000042539 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17469452:17470294:-1 11/11 None
F11E6.4 ENSEMBL cdna:known chromosome:CEL140:IV:17469452:17470294:-1 gene:F11E6.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042535 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17469457-17470300(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11E6.4
Entrez Gene 184358 Entrez gene
SwissProt Q9XVQ8 EMBL-EBI
WormBase CE31167 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02922 Hypothetical protein F11E6.4 [Caenorhabditis elegans] ref|NP_503115.2| F11E6.4 [Caenorhabditis elegans] 1.0E-72
blast CAB02922 Hypothetical protein F11E6.4 [Caenorhabditis elegans] ref|NP_503115.2| F11E6.4 [Caenorhabditis elegans] 2.0E-68
blast CAE57471 Hypothetical protein CBG00437 [Caenorhabditis briggsae] 3.0E-47
blast CAE57471 Hypothetical protein CBG00437 [Caenorhabditis briggsae] 2.0E-43
blast CAE73505 Hypothetical protein CBG20963 [Caenorhabditis briggsae] 6.0E-18
blast CAE57469 Hypothetical protein CBG00435 [Caenorhabditis briggsae] 6.0E-17
Sequence
Target Sequence 
>C. ELEGANS:179570_AT
ttccattctctataactgcatgcgacattactgcaactatgacttcacagacttaccatc
tggtttacgctcaattcaccttccataatgaaaccagaagccctgtctaccaattcaatc
aggacggagaaatgaaaacggtccatataactggaacattttgcaacatgaaacctacca
gactcgatgcatacaaaacatatccgaaactaggagataaaccatgcggttctagccaag
cgtttatcgagggctttggttatcttctaagtgatggagtgttcatgggaatgaaagctg
gtattgcgtgtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCATTCTCTATAACTGCATGCGA 165 701 47 Antisense
GCGACATTACTGCAACTATGACTTC 456 289 68 Antisense
CTATGACTTCACAGACTTACCATCT 466 223 83 Antisense
TTACCATCTGGTTTACGCTCAATTC 107 681 99 Antisense
ACGCTCAATTCACCTTCCATAATGA 606 91 113 Antisense
ATGAAACCAGAAGCCCTGTCTACCA 28 45 134 Antisense
AAGCCCTGTCTACCAATTCAATCAG 433 149 144 Antisense
GAAACCTACCAGACTCGATGCATAC 554 357 216 Antisense
ATGCGGTTCTAGCCAAGCGTTTATC 221 41 270 Antisense
TATCGAGGGCTTTGGTTATCTTCTA 664 657 291 Antisense
GAATGAAAGCTGGTATTGCGTGTGC 506 331 335 Antisense
Sequence Source Affymetrix Proprietary Database