[Home] | [Total List]

[179569_at]

Description F55C9.5 /REP_DB=WormBase Gene ID /WP=CE18737 /TR=Q9XUZ0 /GB=CAB04472.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 21      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 24.7
(3)
A 		15
(0)
A 		20.3
(1.7)
A 		5
(-3)
A 		20
B 20.1
(3)
A 		2.4
(-3)
A 		3.4
(-2.7)
A 		4.2
(-2.4)
A 		18
C 1.7
(-3)
A 		21.1
(-0.3)
A 		3.6
(-2.7)
A 		44.8
(3)
A 		43
avr 15.5
(1.3) 		12.8
(-0.5) 		9.1
(-3) 		18
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 6.6
(-3)
A 		36.7
(-0.2)
M 		70.9
(3)
P 		53.7
(1.4)
P 		29.3
(-0.9)
A 		25.8
(-1.2)
A 		64
B 14.1
(-3)
A 		26.3
(-1.8)
A 		44.9
(0.1)
A 		73.9
(3)
P 		41.4
(-0.3)
P 		37.8
(-0.6)
A 		60
C 2.4
(-3)
A 		34.9
(-0.3)
A 		47.2
(0.7)
M 		74.2
(3)
P 		53.9
(1.3)
P 		36.3
(-0.2)
A 		72
avr 7.7
(-3) 		32.6
(-0.5) 		54.3
(1.7) 		67.3
(3) 		41.5
(0.4) 		33.3
(-0.4) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 9
(3)
A 		3.3
(-1.1)
A 		5.3
(0.3)
A 		0.7
(-3)
A 		8
B 6.4
(3)
A 		0.6
(-3)
A 		0.8
(-2.8)
A 		0.9
(-2.7)
A 		6
C 0.6
(-3)
A 		6.1
(1.7)
A 		1.3
(-2.4)
A 		7.6
(3)
A 		7
avr 5.3
(3) 		3.3
(-1.3) 		2.5
(-3) 		3.1
(-1.7) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.2
(-3)
A 		13.1
(2)
M 		15.4
(3)
P 		13.6
(2.2)
P 		8.9
(0.3)
A 		6.3
(-0.8)
A 		14
B 4.9
(-3)
A 		8.7
(-1.4)
A 		10.9
(-0.6)
A 		19.6
(3)
P 		16.8
(1.9)
P 		14.1
(0.8)
A 		15
C 0.9
(-3)
A 		10.7
(0.6)
A 		12
(1)
M 		14.9
(2.1)
P 		17.4
(3)
P 		12.1
(1.1)
A 		17
avr 2.3
(-3) 		10.8
(0.7) 		12.8
(1.6) 		16
(3) 		14.4
(2.3) 		10.8
(0.7) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179569_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13025
Sequence Type Exemplar sequence
Representative Public ID F55C9.5 NCBI
Target Description F55C9.5 /REP_DB=WormBase Gene ID /WP=CE18737 /TR=Q9XUZ0 /GB=CAB04472.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075353(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075353 NCBI Caenorhabditis elegans F55C9.5 (F55C9.5) mRNA, complete cds. 11/11 None
F55C9.5 ENSEMBL cdna:known chromosome:CEL140:V:19293238:19293552:-1 gene:F55C9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000026283 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19293237-19293552(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55C9.5
Entrez Gene 186293 Entrez gene
SwissProt Q9XUZ0 EMBL-EBI
WormBase CE18737 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04472 Hypothetical protein F55C9.5 [Caenorhabditis elegans] ref|NP_507754.1| F55C9.5 [Caenorhabditis elegans] 1.0E-37
Sequence
Target Sequence 
>C. ELEGANS:179569_AT
gggaaacaataccattggagcacgtaaatcaactacttcgaaattttggaaatgtcgaag
ttgtatagcatcacggacaacggaaagccggaataattcaattatccaacaacgacgcaa
ctttattattaggaccaagaaggagattccatttccaaaacgaggagcaagcaaagactc
ctgtggaagctgccataatcagaagaatttgattgtctgccacctttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAAACAATACCATTGGAGCACGT 89 495 15 Antisense
GGAGCACGTAAATCAACTACTTCGA 417 519 31 Antisense
TGTCGAAGTTGTATAGCATCACGGA 710 551 67 Antisense
GCATCACGGACAACGGAAAGCCGGA 432 297 82 Antisense
ATTATCCAACAACGACGCAACTTTA 143 11 115 Antisense
GACGCAACTTTATTATTAGGACCAA 111 381 128 Antisense
GGACCAAGAAGGAGATTCCATTTCC 428 521 146 Antisense
GATTCCATTTCCAAAACGAGGAGCA 287 433 159 Antisense
AGCAAGCAAAGACTCCTGTGGAAGC 19 77 180 Antisense
GACTCCTGTGGAAGCTGCCATAATC 170 375 190 Antisense
AGAATTTGATTGTCTGCCACCTTTT 693 75 218 Antisense
Sequence Source Affymetrix Proprietary Database