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[179568_at]

Description F49B2.2 /REP_DB=WormBase Gene ID /WP=CE16073 /TR=O45536 /GB=CAB04424.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 5.7
(-3)
A 		11.9
(-1.9)
A 		9.5
(-2.3)
A 		40.1
(3)
A 		34
B 8.7
(-2.4)
A 		9.8
(-2)
A 		6.7
(-3)
A 		25.5
(3)
A 		19
C 8.5
(-2.8)
A 		20.7
(-1.1)
A 		6.8
(-3)
A 		50.8
(3)
A 		44
avr 7.6
(-3) 		14.1
(-1.8) 		7.7
(-3) 		38.8
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 10
(-1.3)
A 		12.2
(-0.6)
A 		4.6
(-3)
A 		10.9
(-1)
A 		10.7
(-1)
A 		23.3
(3)
A 		19
B 4.7
(-3)
A 		43.9
(3)
A 		39.6
(2.3)
A 		29.6
(0.8)
A 		39
(2.3)
A 		9.9
(-2.2)
A 		39
C 11.4
(-2.9)
A 		20.7
(-2)
A 		10.4
(-3)
A 		70.1
(3)
A 		24.4
(-1.6)
A 		27
(-1.3)
A 		60
avr 8.7
(-3) 		25.6
(0.6) 		18.2
(-1) 		36.9
(3) 		24.7
(0.4) 		20.1
(-0.6) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.1
(-3)
A 		2.6
(-2.2)
A 		2.5
(-2.4)
A 		5.9
(3)
A 		4
B 2.8
(-1.1)
A 		2.4
(-1.7)
A 		1.6
(-3)
A 		5.4
(3)
A 		4
C 2.8
(-2.6)
A 		6
(0.5)
A 		2.4
(-3)
A 		8.6
(3)
A 		6
avr 2.6
(-2.5) 		3.7
(-1) 		2.2
(-3) 		6.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.8
(-2)
A 		4.3
(1.2)
A 		1
(-3)
A 		2.8
(-0.7)
A 		3.2
(-0.2)
A 		5.7
(3)
A 		5
B 1.6
(-3)
A 		14.6
(2.5)
A 		9.6
(0.4)
A 		7.8
(-0.4)
A 		15.8
(3)
A 		3.7
(-2.1)
A 		14
C 4.2
(-2.2)
A 		6.3
(-1.1)
A 		2.7
(-3)
A 		14.1
(3)
A 		7.9
(-0.3)
A 		9
(0.3)
A 		11
avr 2.5
(-3) 		8.4
(2.4) 		4.4
(-1.2) 		8.2
(2.3) 		9
(3) 		6.1
(0.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179568_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2164
Sequence Type Exemplar sequence
Representative Public ID F49B2.2 NCBI
Target Description F49B2.2 /REP_DB=WormBase Gene ID /WP=CE16073 /TR=O45536 /GB=CAB04424.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061097(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061097 NCBI Caenorhabditis elegans F49B2.2 (F49B2.2) mRNA, complete cds. 11/11 None
SNAP00000010602 ENSEMBL cdna:SNAP chromosome:CEL140:I:14305407:14306383:1 11/11 None
GENEFINDER00000010614 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14305407:14306383:1 10/11 None
F49B2.2 ENSEMBL cdna:known chromosome:CEL140:I:14305407:14306383:1 gene:F49B2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14305337-14306314(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49B2.2
Entrez Gene 186009 Entrez gene
SwissProt O45536 EMBL-EBI
WormBase CE16073 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04424 Hypothetical protein F49B2.2 [Caenorhabditis elegans] ref|NP_493498.1| F49B2.2 [Caenorhabditis elegans] 1.0E-174
blast CAB04424 Hypothetical protein F49B2.2 [Caenorhabditis elegans] ref|NP_493498.1| F49B2.2 [Caenorhabditis elegans] 1.0E-153
blast CAB82208 Hypothetical protein F09C3.5 [Caenorhabditis elegans] ref|NP_493494.1| F09C3.5 [Caenorhabditis elegans] 4.0E-39
blast CAB07181 Hypothetical protein F09C3.3 [Caenorhabditis elegans] ref|NP_493495.1| F09C3.3 [Caenorhabditis elegans] 6.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.3E-7
Sequence
Target Sequence 
>C. ELEGANS:179568_AT
tgaggaggactgttcggtgggttggacataaagcgctcattgagcacttcatcgtgttat
tccatcgatcgaaaatcgacaggattagtcttcgtagagctgtgttggattccgaacagc
tcgccaatatgcacataccgattggagagttcagattgtgcactgatggtcttctttacg
atgaggttattcggagtatttcaattctcaaatctgaaaagctacacatcacatgcaacc
ataacagtttcgaagaccgccagatgcacgagctacttggaagaaatcttactggtgtgg
agttcagtaaaatggaaaaatcttcgttatggatgactaatgcaacacatatcagaacac
tggtatgtatcaaatcacatttgttgaatgaattcctgaagcactggatccaaggatcaa
atcccagaatgaaatatctacagacttccgttcaactggagatggaagagtgcaagtcaa
agatatttcaagggataaatgtgtctattgaggaggatgcgataatgattaaaagtcttc
gaggaacacttgcgaggatcactttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGGAGGACTGTTCGGTGGGTTGG 592 565 320 Antisense
GGTGGGTTGGACATAAAGCGCTCAT 288 497 335 Antisense
GAGCACTTCATCGTGTTATTCCATC 497 389 361 Antisense
TGTGTTGGATTCCGAACAGCTCGCC 598 555 420 Antisense
AACAGCTCGCCAATATGCACATACC 54 137 434 Antisense
TGTGCACTGATGGTCTTCTTTACGA 318 557 476 Antisense
AAAGCTACACATCACATGCAACCAT 190 125 537 Antisense
AACAGTTTCGAAGACCGCCAGATGC 209 137 562 Antisense
CCGCCAGATGCACGAGCTACTTGGA 174 263 576 Antisense
AATATCTACAGACTTCCGTTCAACT 634 173 752 Antisense
GGAACACTTGCGAGGATCACTTTGA 352 529 862 Antisense
Sequence Source Affymetrix Proprietary Database