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[179567_at]

Description C10C6.3 /REP_DB=WormBase Gene ID /WP=CE08057 /TR=P90743 /GB=CAB05680.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 3.4
(-3)
A 		13
(-1.3)
A 		6.5
(-2.5)
A 		37.4
(3)
A 		34
B 3.8
(-2.6)
A 		8
(3)
A 		3.5
(-3)
A 		6.1
(0.5)
A 		5
C 37.4
(3)
A 		16.9
(-0.9)
A 		6.1
(-3)
A 		33.5
(2.3)
A 		31
avr 14.9
(-0.2) 		12.6
(-0.9) 		5.4
(-3) 		25.7
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 3.3
(-2.9)
A 		19
(-0.3)
A 		3.7
(-2.8)
A 		2.5
(-3)
A 		13.3
(-1.2)
A 		39.2
(3)
A 		37
B 4.4
(-2)
A 		3.8
(-3)
A 		5.9
(0.4)
A 		7.5
(3)
A 		4.5
(-1.9)
A 		4.2
(-2.4)
A 		4
C 5.7
(-1.9)
A 		9.5
(-0.3)
A 		2.9
(-3)
A 		3
(-3)
A 		17.7
(3)
A 		3.5
(-2.8)
A 		15
avr 4.5
(-2.8) 		10.8
(0.5) 		4.2
(-3) 		4.3
(-2.9) 		11.8
(1) 		15.6
(3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.2
(-3)
A 		2.8
(-0.8)
A 		1.7
(-2.3)
A 		5.5
(3)
A 		4
B 1.2
(-1)
A 		2
(3)
A 		0.8
(-3)
A 		1.3
(-0.5)
A 		1
C 12.4
(3)
A 		4.9
(-1.4)
A 		2.1
(-3)
A 		5.6
(-1)
A 		10
avr 4.9
(3) 		3.2
(0) 		1.5
(-3) 		4.1
(1.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.6
(-3)
A 		6.7
(1.1)
A 		0.8
(-2.9)
A 		0.6
(-3)
A 		4
(-0.7)
A 		9.5
(3)
A 		9
B 1.5
(-1.3)
A 		1.3
(-3)
A 		1.4
(-2.1)
A 		2
(3)
A 		1.8
(1.3)
A 		1.6
(-0.4)
A 		1
C 2.1
(-1.2)
A 		2.9
(-0.3)
A 		0.8
(-2.8)
A 		0.6
(-3)
A 		5.7
(3)
A 		1.2
(-2.3)
A 		5
avr 1.4
(-2.2) 		3.6
(2) 		1
(-3) 		1.1
(-2.8) 		3.8
(2.4) 		4.1
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179567_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9031
Sequence Type Exemplar sequence
Representative Public ID C10C6.3 NCBI
Target Description C10C6.3 /REP_DB=WormBase Gene ID /WP=CE08057 /TR=P90743 /GB=CAB05680.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069762(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069762 NCBI Caenorhabditis elegans C10C6.3 (C10C6.3) mRNA, complete cds. 11/11 None
SNAP00000034486 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11463580:11465160:-1 11/11 None
GENEFINDER00000034495 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11463580:11467203:-1 11/11 None
C10C6.3 ENSEMBL cdna:known chromosome:CEL140:IV:11463580:11465160:-1 gene:C10C6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11463585-11465166(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10C6.3
Entrez Gene 182495 Entrez gene
SwissProt P90743 EMBL-EBI
WormBase CE35392 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05680 Hypothetical protein C10C6.3 [Caenorhabditis elegans] ref|NP_502163.2| C10C6.3 [Caenorhabditis elegans] 1.0E-143
blast CAB05680 Hypothetical protein C10C6.3 [Caenorhabditis elegans] ref|NP_502163.2| C10C6.3 [Caenorhabditis elegans] 1.0E-140
blast CAB05680 Hypothetical protein C10C6.3 [Caenorhabditis elegans] ref|NP_502163.2| C10C6.3 [Caenorhabditis elegans] 1.0E-136
blast CAE62114 Hypothetical protein CBG06152 [Caenorhabditis briggsae] 1.0E-99
blast CAA80126 Hypothetical protein C15H7.4 [Caenorhabditis elegans] ref|NP_499136.1| C15H7.4 [Caenorhabditis elegans] sp|P34338|YK14_CAEEL Hypothetical protein C15H7.4 in chromosome III 3.0E-66
blast CAA80126 Hypothetical protein C15H7.4 [Caenorhabditis elegans] ref|NP_499136.1| C15H7.4 [Caenorhabditis elegans] sp|P34338|YK14_CAEEL Hypothetical protein C15H7.4 in chromosome III 6.0E-64
blast CAA80126 Hypothetical protein C15H7.4 [Caenorhabditis elegans] ref|NP_499136.1| C15H7.4 [Caenorhabditis elegans] sp|P34338|YK14_CAEEL Hypothetical protein C15H7.4 in chromosome III 3.0E-60
blast CAE66259 Hypothetical protein CBG11503 [Caenorhabditis briggsae] 1.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034495 4 66-88,98-120,127-149,164-186
Sequence
Target Sequence 
>C. ELEGANS:179567_AT
atgagtggaacctttacttcgcctattcatgagactcacggacacacgggaggaacagga
acagatggtacaacttcaaatattgaatctgatttaaaagagaaaccagacactaatgtg
tatactggatcacgagaaggatatgttccaccaccagctaaggaaggatcaggaagtggt
gggaagaagaaagatatgaataatgttgcggttaaaccggatgagaagaaaaaggattct
ggaagaaagctgaagaagaccgtatcaaaaaccatcacaaaattatcagtatcggagtca
aagaagaaaactgagaaaaaaattgcagcgactcagaaaactcaagaattcccaatccca
aaaactgtcgacgaggcgcacacgaactcggagccggacggagatcctttgaaactgaag
aagacgatcaccgatggaaacgaattatcgttgaaaggtgcaactgctccgactccacag
aaagccaagctgacaacaccaacttctacgactccagcctcatcattaacaccaagtaat
gcgttgacacctggaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGTGGAACCTTTACTTCGCCTA 707 39 418 Antisense
TACTTCGCCTATTCATGAGACTCAC 465 645 432 Antisense
GAGACTCACGGACACACGGGAGGAA 708 389 448 Antisense
GAAGACCGTATCAAAAACCATCACA 446 339 672 Antisense
GAATTCCCAATCCCAAAAACTGTCG 139 323 763 Antisense
TCGACGAGGCGCACACGAACTCGGA 43 601 785 Antisense
GAACTCGGAGCCGGACGGAGATCCT 206 347 801 Antisense
TTGAAAGGTGCAACTGCTCCGACTC 406 705 868 Antisense
AAAGCCAAGCTGACAACACCAACTT 481 125 898 Antisense
TCCAGCCTCATCATTAACACCAAGT 429 589 930 Antisense
AGTAATGCGTTGACACCTGGAAATG 595 61 952 Antisense
Sequence Source Affymetrix Proprietary Database