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[179566_s_at]

Description M04C3.1 /REP_DB=WormBase Gene ID /WP=CE18078 /TR=O62080 /GB=CAB07268.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 53      4grp_high_8_8 > 07      6grp_total > 70      4grp_total > 04      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 249
1 2 3 4 range
A 125.2
(3)
P 		76.9
(-2.4)
A 		72
(-3)
A 		80.2
(-2.1)
A 		53
B 165.6
(-0.6)
A 		67.7
(-3)
P 		81.7
(-2.7)
P 		317
(3)
P 		249
C 82.9
(-3)
P 		111.2
(-1.9)
A 		104.7
(-2.2)
P 		240.5
(3)
P 		158
avr 124.6
(-1.1) 		85.3
(-3) 		86.1
(-3) 		212.6
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 101.4
(-3)
A 		115.4
(-2.1)
P 		192.2
(3)
P 		126.6
(-1.3)
P 		155
(0.5)
M 		142.1
(-0.3)
P 		91
B 128.2
(0)
P 		163.7
(1.8)
P 		160.6
(1.7)
M 		186.6
(3)
P 		68.6
(-3)
M 		109.3
(-0.9)
P 		118
C 87.1
(-2.3)
P 		198.9
(0.4)
P 		106.6
(-1.8)
A 		310
(3)
P 		57.9
(-3)
P 		176.7
(-0.2)
P 		252
avr 105.6
(-2.4) 		159.3
(0.5) 		153.1
(0.1) 		207.7
(3) 		93.8
(-3) 		142.7
(-0.4) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 45.6
(3)
P 		16.7
(-2.1)
A 		18.8
(-1.7)
A 		11.7
(-3)
A 		34
B 52.8
(1.3)
A 		16.7
(-3)
P 		18.9
(-2.7)
P 		67.6
(3)
P 		51
C 27.5
(-3)
P 		32
(-0.9)
A 		36.5
(1.1)
P 		40.6
(3)
P 		13
avr 42
(3) 		21.8
(-3) 		24.7
(-2.1) 		40
(2.4) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 18.7
(-3)
A 		41
(1.8)
P 		41.9
(2)
P 		32.1
(-0.1)
P 		46.8
(3)
M 		34.6
(0.4)
P 		28
B 44.6
(0.8)
P 		54.5
(3)
P 		39
(-0.5)
M 		49.4
(1.8)
P 		27.9
(-3)
M 		40.8
(-0.1)
P 		27
C 32.3
(-1.1)
P 		60.7
(2.8)
P 		27.1
(-1.8)
A 		62.3
(3)
P 		18.7
(-3)
P 		59.1
(2.6)
P 		44
avr 31.9
(-2.8) 		52.1
(3) 		36
(-1.6) 		47.9
(1.8) 		31.1
(-3) 		44.8
(0.9) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179566_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14248
Sequence Type Exemplar sequence
Representative Public ID M04C3.1 NCBI
Target Description M04C3.1 /REP_DB=WormBase Gene ID /WP=CE18078 /TR=O62080 /GB=CAB07268.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182372(9), NM_075381(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182372 NCBI Caenorhabditis elegans M04C3.1b (M04C3.1) mRNA, complete cds. 9/11 None
NM_075381 NCBI Caenorhabditis elegans M04C3.1a (M04C3.1) mRNA, complete cds. 11/11 None
M04C3.1b ENSEMBL cdna:known chromosome:CEL140:V:19440529:19446193:-1 gene:M04C3.1 9/11 None
M04C3.1a ENSEMBL cdna:known chromosome:CEL140:V:19440537:19446193:-1 gene:M04C3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024080 4/11 Cross Hyb Matching Probes None
GENEFINDER00000028323 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19440536-19446193(-) 100.0 100.0
Public Domain and Genome References
Ensembl M04C3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD54148 Hypothetical protein M04C3.1b [Caenorhabditis elegans] emb|CAD54124.1| Hypothetical protein M04C3.1b [Caenorhabditis elegans] ref|NP_872172.1| M04C3.1b [Caenorhabditis elegans] 0.0
blast CAB07268 Hypothetical protein M04C3.1a [Caenorhabditis elegans] emb|CAB03924.1| Hypothetical protein M04C3.1a [Caenorhabditis elegans] ref|NP_507782.1| M04C3.1a [Caenorhabditis elegans] 0.0
blast CAB03923 Hypothetical protein C25F9.5 [Caenorhabditis elegans] ref|NP_507777.1| C25F9.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000330 EMBL-EBI SNF2 related domain 3.2E-7
Sequence
Target Sequence 
>C. ELEGANS:179566_S_AT
gatttgattcgcgatgtacttgttgaaaagaaattattgtctgaacacatgatcatatcc
tcaatctgtaaaaccatatttcttccaaatttacagaatgaacataaacctacttatttc
tctacggatatgcacacgtatataatctacaacttcagcatgtttttgatcaaggcgaaa
gaaatgtcggaacagaatccacccgatatagttatgttttgcaacctcatttggggtgca
gctgttatttgcttaagaaagttctttctgtccagattccaacttgaggtatcaaaacca
caaatacaagaaaaactcatgaaaattgttttggagtcttttacaaacgaacccattgtt
tgtggacgtttatacgaagcctgggaacacgcaaaacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTGATTCGCGATGTACTTGTTG 676 425 2236 Antisense
ACACATGATCATATCCTCAATCTGT 556 109 2280 Antisense
ATCTGTAAAACCATATTTCTTCCAA 179 5 2299 Antisense
AACCTACTTATTTCTCTACGGATAT 164 145 2342 Antisense
GGAACAGAATCCACCCGATATAGTT 672 527 2424 Antisense
TGTTTTGCAACCTCATTTGGGGTGC 475 557 2450 Antisense
GGGGTGCAGCTGTTATTTGCTTAAG 103 499 2468 Antisense
CTTTCTGTCCAGATTCCAACTTGAG 458 223 2499 Antisense
GAGTCTTTTACAAACGAACCCATTG 162 287 2569 Antisense
GAACCCATTGTTTGTGGACGTTTAT 660 345 2584 Antisense
CGAAGCCTGGGAACACGCAAAACGT 330 251 2610 Antisense
Sequence Source Affymetrix Proprietary Database