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[179565_at]

Description C47F8.6 /REP_DB=WormBase Gene ID /WP=CE17575 /TR=O62115 /GB=CAA15839.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 22      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 5.2
(-1.6)
A 		10.7
(3)
A 		3.5
(-3)
A 		5.5
(-1.3)
A 		7
B 39.7
(3)
A 		11.4
(-2.3)
A 		7.8
(-3)
A 		11.4
(-2.3)
A 		32
C 7.6
(-2.2)
A 		7
(-2.3)
A 		3.5
(-3)
A 		32.6
(3)
A 		29
avr 17.5
(3) 		9.7
(-0.7) 		4.9
(-3) 		16.5
(2.5) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 11.1
(3)
A 		3.3
(-3)
A 		5
(-1.7)
A 		4.1
(-2.4)
A 		4.5
(-2.1)
A 		8
(0.6)
A 		8
B 4.5
(-3)
A 		11
(0.7)
A 		12.4
(1.5)
A 		15.1
(3)
A 		6.9
(-1.6)
A 		5.6
(-2.4)
A 		11
C 5.1
(-1.3)
A 		13.8
(3)
A 		7.4
(-0.2)
A 		6.4
(-0.7)
A 		1.7
(-3)
A 		6.2
(-0.8)
A 		12
avr 6.9
(0) 		9.4
(3) 		8.3
(1.7) 		8.5
(1.9) 		4.4
(-3) 		6.6
(-0.4) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.9
(1.4)
A 		2.3
(3)
A 		0.9
(-2.6)
A 		0.8
(-3)
A 		2
B 12.6
(3)
A 		2.8
(-2.4)
A 		1.8
(-3)
A 		2.4
(-2.7)
A 		11
C 2.5
(-1.2)
A 		2
(-1.9)
A 		1.2
(-3)
A 		5.5
(3)
A 		4
avr 5.7
(3) 		2.4
(-1.5) 		1.3
(-3) 		2.9
(-0.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 2
(3)
A 		1.2
(-1.8)
A 		1.1
(-2.4)
A 		1
(-3)
A 		1.3
(-1.2)
A 		1.9
(2.4)
A 		1
B 1.6
(-3)
A 		3.7
(2.3)
A 		3
(0.5)
A 		4
(3)
A 		2.8
(-0)
A 		2.1
(-1.8)
A 		2
C 1.9
(-0.7)
A 		4.2
(3)
A 		1.9
(-0.7)
A 		1.3
(-1.7)
A 		0.5
(-3)
A 		2.1
(-0.4)
A 		4
avr 1.8
(-1.8) 		3
(3) 		2
(-1) 		2.1
(-0.6) 		1.5
(-3) 		2
(-1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179565_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.642
Sequence Type Exemplar sequence
Representative Public ID C47F8.6 NCBI
Target Description C47F8.6 /REP_DB=WormBase Gene ID /WP=CE17575 /TR=O62115 /GB=CAA15839.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060714(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060714 NCBI Caenorhabditis elegans C47F8.6 (C47F8.6) mRNA, complete cds. 11/11 None
GENEFINDER00000020217 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12327472:12332184:1 11/11 None
SNAP00000020210 ENSEMBL cdna:SNAP chromosome:CEL140:I:12327767:12329210:1 11/11 None
C47F8.6 ENSEMBL cdna:known chromosome:CEL140:I:12327472:12328976:1 gene:C47F8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12327402-12328907(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47F8.6
Entrez Gene 183562 Entrez gene
SwissProt O62115 EMBL-EBI
WormBase CE17575 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6486 protein amino acid glycosylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8378 galactosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA15839 Hypothetical protein C47F8.6 [Caenorhabditis elegans] ref|NP_493115.1| C47F8.6 [Caenorhabditis elegans] 0.0
blast CAA15838 Hypothetical protein C47F8.5 [Caenorhabditis elegans] ref|NP_493116.2| C47F8.5 [Caenorhabditis elegans] 1.0E-173
blast CAB04032 Hypothetical protein E03H4.11 [Caenorhabditis elegans] ref|NP_493153.1| E03H4.11 [Caenorhabditis elegans] 1.0E-139
blast CAB04032 Hypothetical protein E03H4.11 [Caenorhabditis elegans] ref|NP_493153.1| E03H4.11 [Caenorhabditis elegans] 1.0E-138
blast CAA15839 Hypothetical protein C47F8.6 [Caenorhabditis elegans] ref|NP_493115.1| C47F8.6 [Caenorhabditis elegans] 1.0E-138
blast CAB05465 Hypothetical protein C54C8.3 [Caenorhabditis elegans] ref|NP_493158.2| C54C8.3 [Caenorhabditis elegans] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 3.6E-114
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 5.0E-108
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 3.6E-114
Sequence
Target Sequence 
>C. ELEGANS:179565_AT
agtccctgatgatatttctcttcggagtcagcaaagctccacaatacaaaataatcggga
aaatcgacgaggacatcatgttcttcccggataagcttatggctctctacgagcaaggta
tcatagattccaccccagtgagcctttacggactagttatcccagccgggcgggacatat
tccgtgataagaccaatcggtggtatgtccctgaatctgcctactcttgctctcaatacc
ctgcttatctttctggcatgtactatatggctacgcgggaggctgctcagatgctcttaa
agtcaactaagcaccgagattttattcaggtagaagacgttttgctcacaggaattcttg
cggaagatctgggaatcccgataagggacatgccgaagctctacaaattcccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCCCTGATGATATTTCTCTTCGG 365 61 527 Antisense
GATAAGCTTATGGCTCTCTACGAGC 169 423 616 Antisense
AAGGTATCATAGATTCCACCCCAGT 157 159 641 Antisense
TTACGGACTAGTTATCCCAGCCGGG 690 559 672 Antisense
AGCCGGGCGGGACATATTCCGTGAT 599 81 690 Antisense
ATCGGTGGTATGTCCCTGAATCTGC 445 33 722 Antisense
CCCTGCTTATCTTTCTGGCATGTAC 700 259 765 Antisense
CTATATGGCTACGCGGGAGGCTGCT 122 215 789 Antisense
GGAGGCTGCTCAGATGCTCTTAAAG 492 515 804 Antisense
GACGTTTTGCTCACAGGAATTCTTG 366 377 862 Antisense
ATGCCGAAGCTCTACAAATTCCCAC 656 41 916 Antisense
Sequence Source Affymetrix Proprietary Database