[Home] | [Total List]

[179563_at]

Description C25D7.5 /REP_DB=WormBase Gene ID /WP=CE08391 /TR=O17598 /GB=CAB02776.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 26      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_total > 28      4grp_total > 56      6grp_high1_sub > De      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 93.4
(-1.4)
P 		74.2
(-3)
P 		146.8
(3)
P 		81.4
(-2.4)
P 		73
B 126.6
(-0)
P 		91.9
(-1.9)
P 		181.7
(3)
P 		71.8
(-3)
P 		110
C 82.1
(-3)
P 		111
(-0.8)
P 		161.3
(3)
P 		122
(0)
P 		79
avr 100.7
(-2.2) 		92.4
(-2.9) 		163.3
(3) 		91.7
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 119.3
(3)
P 		76
(-1.9)
P 		66.2
(-3)
P 		89.6
(-0.4)
P 		73.7
(-2.2)
P 		66.5
(-3)
P 		53
B 76.1
(-3)
P 		102.7
(1.5)
P 		111.5
(3)
P 		76.3
(-3)
P 		95.8
(0.3)
P 		99.2
(0.9)
P 		35
C 88.3
(1.4)
P 		102
(3)
P 		50.6
(-3)
A 		73.4
(-0.3)
P 		92.2
(1.9)
P 		93.7
(2)
P 		51
avr 94.6
(3) 		93.6
(2.7) 		76.1
(-3) 		79.8
(-1.8) 		87.2
(0.6) 		86.5
(0.4) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 34
(2)
P 		16.1
(-2)
P 		38.4
(3)
P 		11.9
(-3)
P 		27
B 40.4
(2.6)
P 		22.7
(-1.3)
P 		42.1
(3)
P 		15.3
(-3)
P 		27
C 27.2
(-1.9)
P 		31.9
(-1.1)
P 		56.2
(3)
P 		20.6
(-3)
P 		36
avr 33.9
(0.6) 		23.6
(-1.4) 		45.6
(3) 		15.9
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 22
(0.6)
P 		27
(3)
P 		14.4
(-3)
P 		22.7
(1)
P 		22.2
(0.7)
P 		16.2
(-2.1)
P 		13
B 26.5
(-1)
P 		34.2
(1.5)
P 		27.1
(-0.8)
P 		20.2
(-3)
P 		38.9
(3)
P 		37
(2.4)
P 		19
C 32.7
(3)
P 		31.1
(2.5)
P 		12.9
(-3)
A 		14.8
(-2.4)
P 		29.8
(2.1)
P 		31.4
(2.6)
P 		20
avr 27.1
(1.3) 		30.8
(3) 		18.1
(-3) 		19.2
(-2.5) 		30.3
(2.8) 		28.2
(1.8) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179563_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13968
Sequence Type Exemplar sequence
Representative Public ID C25D7.5 NCBI
Target Description C25D7.5 /REP_DB=WormBase Gene ID /WP=CE08391 /TR=O17598 /GB=CAB02776.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074304(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074304 NCBI Caenorhabditis elegans C25D7.5 (C25D7.5) mRNA, complete cds. 11/11 None
C25D7.5 ENSEMBL cdna:known chromosome:CEL140:V:15057029:15059304:1 gene:C25D7.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019708 5/11 Cross Hyb Matching Probes None
SNAP00000019709 4/11 Cross Hyb Matching Probes None
GENEFINDER00000019717 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15057028-15059304(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C25D7.5
Entrez Gene 182884 Entrez gene
SwissProt O17598 EMBL-EBI
WormBase CE08391 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02776 Hypothetical protein C25D7.5 [Caenorhabditis elegans] ref|NP_506705.1| C25D7.5 [Caenorhabditis elegans] 0.0
blast CAE66330 Hypothetical protein CBG11581 [Caenorhabditis briggsae] 1.0E-126
blast CAE66329 Hypothetical protein CBG11580 [Caenorhabditis briggsae] 2.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 4.7E-5
Sequence
Target Sequence 
>C. ELEGANS:179563_AT
cacagcctcagttctcaggaaatttgaatttattcccattttcacagttcataatggccg
acgccacaatgtacaaggataatatcgtttttatgaaacgatttgaaaagcattcaattc
tggaattatgctctccgaattctctaattcagtcgacacccggacccactccaaactcaa
taaccgtaataattcgaaacgtggatttaatgggaacaattgcaatcgccggcgccctct
tcccaaatggaaacgatttaaacgttttcgatcggaattccgtgtatgatatcgataaat
tgatcgaatcacgaaatcaggcgctgaaaggaataaaaactcgaaatatccgagagacga
atgtagttttgttcaagaaaaatgaggaaattcatgtgagaatcgaattgaagccaatgg
aattccctgacacaaatcgttgcaaagcggttcaagcgaacaccattccgttggttggtg
accatcgactcggatgtaccggaattcagtatcgacaggagaaggcagcgaaacgtggaa
agaaggctcgcatgtcgaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAGCCTCAGTTCTCAGGAAATTT 419 195 506 Antisense
TTCACAGTTCATAATGGCCGACGCC 375 685 546 Antisense
TGGCCGACGCCACAATGTACAAGGA 58 543 560 Antisense
AATTATGCTCTCCGAATTCTCTAAT 302 175 629 Antisense
TCTCTAATTCAGTCGACACCCGGAC 447 607 646 Antisense
AATGGGAACAATTGCAATCGCCGGC 438 159 714 Antisense
GCGCCCTCTTCCCAAATGGAAACGA 682 287 737 Antisense
GGAATTCCCTGACACAAATCGTTGC 625 531 924 Antisense
AGCGAACACCATTCCGTTGGTTGGT 53 83 960 Antisense
GGTGACCATCGACTCGGATGTACCG 238 501 982 Antisense
GGAAAGAAGGCTCGCATGTCGACCG 116 525 1042 Antisense
Sequence Source Affymetrix Proprietary Database