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[179562_at]

Description C48G7.1 /REP_DB=WormBase Gene ID /WP=CE08825 /TR=Q18703 /GB=CAB01494.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 76      4grp_highest_8_8 > 62      4grp_high_8_8 > 26      6grp_total > 66      4grp_total > 37      6grp_cgc > 47      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 237.6
(3)
P 		159.4
(-1.1)
P 		122.3
(-3)
P 		191.5
(0.6)
P 		115
B 236.6
(1.9)
P 		211.5
(0.4)
P 		152.6
(-3)
P 		255.6
(3)
P 		103
C 249.8
(3)
P 		211.2
(0.2)
P 		166.7
(-3)
P 		166.4
(-3)
P 		83
avr 241.3
(3) 		194
(-0) 		147.2
(-3) 		204.5
(0.7) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 92.3
(-3)
P 		241.8
(1.1)
P 		154.6
(-1.3)
P 		163.5
(-1.1)
P 		129.2
(-2)
M 		311.5
(3)
P 		219
B 139.6
(-2)
P 		160.1
(-1.5)
P 		155.4
(-1.6)
P 		124.4
(-2.4)
P 		98
(-3)
P 		348.2
(3)
P 		250
C 170.1
(-0.7)
P 		164.5
(-0.8)
P 		200.3
(0)
P 		67.2
(-3)
A 		165.6
(-0.8)
P 		330.6
(3)
P 		263
avr 134
(-2.6) 		188.8
(-1) 		170.1
(-1.5) 		118.4
(-3) 		130.9
(-2.6) 		330.1
(3) 		212
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 86.5
(3)
P 		34.6
(-2.3)
P 		32
(-2.6)
P 		28
(-3)
P 		59
B 75.5
(3)
P 		52.2
(-0.5)
P 		35.4
(-3)
P 		54.5
(-0.1)
P 		40
C 82.7
(3)
P 		60.7
(0.6)
P 		58.1
(0.3)
P 		28.1
(-3)
P 		55
avr 81.6
(3) 		49.2
(-1.3) 		41.8
(-2.3) 		36.9
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 17
(-3)
P 		86
(3)
P 		33.7
(-1.5)
P 		41.5
(-0.9)
P 		39
(-1.1)
M 		75.8
(2.1)
P 		69
B 48.6
(-2)
P 		53.3
(-1.7)
P 		37.7
(-2.7)
P 		33
(-3)
P 		39.8
(-2.6)
P 		129.9
(3)
P 		97
C 63
(0.1)
P 		50.2
(-0.7)
P 		51
(-0.7)
P 		13.5
(-3)
A 		53.6
(-0.5)
P 		110.7
(3)
P 		97
avr 42.9
(-1.9) 		63.2
(-0.3) 		40.8
(-2.1) 		29.3
(-3) 		44.1
(-1.8) 		105.5
(3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179562_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13876
Sequence Type Exemplar sequence
Representative Public ID C48G7.1 NCBI
Target Description C48G7.1 /REP_DB=WormBase Gene ID /WP=CE08825 /TR=Q18703 /GB=CAB01494.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074249(10), NM_074250(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074249 NCBI Caenorhabditis elegans C48G7.3 (C48G7.3) mRNA, complete cds. 10/11 None
NM_074250 NCBI Caenorhabditis elegans C48G7.1 (C48G7.1) mRNA, complete cds. 11/11 None
SNAP00000031744 ENSEMBL cdna:SNAP chromosome:CEL140:V:14798511:14799044:-1 10/11 None
GENEFINDER00000031750 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14789401:14807398:-1 11/11 None
C48G7.3 ENSEMBL cdna:known chromosome:CEL140:V:14786769:14799601:-1 gene:C48G7.3 10/11 A 
C48G7.1 ENSEMBL cdna:known chromosome:CEL140:V:14798511:14807488:-1 gene:C48G7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031745 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14798510-14807488(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Gene Symbol tag-333
Ensembl C48G7.3
C48G7.1
Entrez Gene 179978 Entrez gene
3565509 Entrez gene
SwissProt Q18703 EMBL-EBI
Q9TVM3 EMBL-EBI
WormBase CE08825 Wormbase
CE23604 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60286 Hypothetical protein C48G7.3 [Caenorhabditis elegans] emb|CAB60587.1| Hypothetical protein C48G7.3 [Caenorhabditis elegans] ref|NP_506650.1| C48G7.3 [Caenorhabditis elegans] 0.0
blast CAE66361 Hypothetical protein CBG11618 [Caenorhabditis briggsae] 0.0
blast CAB01494 Hypothetical protein C48G7.1 [Caenorhabditis elegans] ref|NP_506651.1| C48G7.1 [Caenorhabditis elegans] 0.0
blast CAE66362 Hypothetical protein CBG11619 [Caenorhabditis briggsae] 0.0
blast CAE66362 Hypothetical protein CBG11619 [Caenorhabditis briggsae] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR003123 EMBL-EBI Vacuolar sorting protein 9 5.7E-63
Pfam IPR000159 EMBL-EBI RA domain 2.7E-19
Sequence
Target Sequence 
>C. ELEGANS:179562_AT
aacgctggcgatcctcaagtgcagcagaattgtgtggaagagttgcgtcgaaaacgatta
caatccaccaatgaaatgctctcaccaaaagagctgccctcgtcaaaacatccccacgga
gaagttcatagtgctcacgcgagccctcaaattgcaatgagacgacgaaatggatttcca
tcaccgtctgcaagtcataatggattcaatcggaataatgcatttgccgctatcgatcga
aatcgtggttcagatcaccggctatcagtacctaatcttatcgctgccactgatcctctt
gtacctggaagtgttggacaatcagcgaaagcattgagagaaaggctcggtggaaggacg
acggatggtgatttgatggtaatcaatgaaggacttgtgactccagttgttcgacggaaa
acatttgcacccgcaacgacgactacaaaaactacagcaacagcggcaacttcgatggat
gagctgggtggagaagtgatgagaagacgggaagcactggaagcggctatgaatgaaaaa
cgacgacatccgtctgattcgttgtcgagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGCTGGCGATCCTCAAGTGCAGC 347 143 1381 Antisense
GAAGTTCATAGTGCTCACGCGAGCC 373 337 1501 Antisense
TCACGCGAGCCCTCAAATTGCAATG 318 627 1515 Antisense
AATGCATTTGCCGCTATCGATCGAA 235 165 1597 Antisense
GAAATCGTGGTTCAGATCACCGGCT 164 363 1619 Antisense
GATCACCGGCTATCAGTACCTAATC 643 419 1633 Antisense
CAGTACCTAATCTTATCGCTGCCAC 532 207 1646 Antisense
CACTGATCCTCTTGTACCTGGAAGT 290 199 1668 Antisense
GGACTTGTGACTCCAGTTGTTCGAC 442 525 1771 Antisense
GCAACAGCGGCAACTTCGATGGATG 170 319 1837 Antisense
ACATCCGTCTGATTCGTTGTCGAGT 43 107 1926 Antisense
Sequence Source Affymetrix Proprietary Database