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[179561_at]

Description ZK228.5 /REP_DB=WormBase Gene ID /WP=CE16714 /TR=O46006 /GB=CAB04992.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 13      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 52.7
(-0.8)
A 		30.4
(-2)
A 		12
(-3)
A 		125.1
(3)
A 		113
B 75.1
(3)
A 		40.9
(-2.9)
A 		40.4
(-3)
A 		50.3
(-1.3)
M 		35
C 62.7
(-0.5)
A 		49.8
(-1.1)
A 		12
(-3)
A 		132.7
(3)
A 		121
avr 63.5
(0.1) 		40.4
(-1.6) 		21.5
(-3) 		102.7
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 51.5
(2.3)
A 		37.3
(0.6)
A 		52.4
(2.4)
A 		7.8
(-3)
A 		57.2
(3)
A 		22.5
(-1.2)
A 		49
B 46.8
(2.8)
A 		25.6
(-0.1)
A 		24.1
(-0.3)
A 		4.2
(-3)
A 		22.2
(-0.5)
A 		47.9
(3)
A 		44
C 35.4
(-0.1)
A 		48.9
(1.8)
A 		46.8
(1.5)
A 		57.4
(3)
A 		14.3
(-3)
A 		50
(2)
A 		43
avr 44.6
(3) 		37.3
(1) 		41.1
(2) 		23.1
(-3) 		31.2
(-0.7) 		40.1
(1.7) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 19.2
(3)
A 		6.6
(-1.7)
A 		3.1
(-3)
A 		18.3
(2.7)
A 		16
B 23.9
(3)
A 		10.1
(-2.7)
A 		9.4
(-3)
A 		10.7
(-2.5)
M 		15
C 20.8
(2.5)
A 		14.3
(0.3)
A 		4.2
(-3)
A 		22.4
(3)
A 		18
avr 21.3
(3) 		10.3
(-1.2) 		5.6
(-3) 		17.1
(1.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.5
(-0.1)
A 		13.3
(1.4)
A 		11.4
(0.7)
A 		2
(-3)
A 		17.3
(3)
A 		5.5
(-1.6)
A 		15
B 16.3
(2.4)
A 		8.5
(-0.4)
A 		5.8
(-1.3)
A 		1.1
(-3)
A 		9
(-0.2)
A 		17.9
(3)
A 		17
C 13.1
(1.2)
A 		14.9
(2.1)
A 		11.9
(0.6)
A 		11.6
(0.5)
A 		4.6
(-3)
A 		16.7
(3)
A 		12
avr 13
(2.7) 		12.2
(2.2) 		9.7
(0.4) 		4.9
(-3) 		10.3
(0.8) 		13.4
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179561_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13511
Sequence Type Exemplar sequence
Representative Public ID ZK228.5 NCBI
Target Description ZK228.5 /REP_DB=WormBase Gene ID /WP=CE16714 /TR=O46006 /GB=CAB04992.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075215
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000029503 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18472482:18475960:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075215 6/11 Cross Hyb Matching Probes None
SNAP00000029499 6/11 Cross Hyb Matching Probes None
ZK228.5 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18474558-18476089(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04992 Hypothetical protein ZK228.5 [Caenorhabditis elegans] ref|NP_507616.2| Serpentine Receptor, class H family member (srh-182) [Caenorhabditis elegans] 1.0E-144
blast CAB04997 Hypothetical protein ZK228.6 [Caenorhabditis elegans] ref|NP_507617.1| Serpentine Receptor, class H family member (srh-181) [Caenorhabditis elegans] 1.0E-115
blast CAA98445 Hypothetical protein D1054.12 [Caenorhabditis elegans] ref|NP_505760.2| Serpentine Receptor, class H family member (srh-184) [Caenorhabditis elegans] 1.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029503 6 7-29,53-72,92-111,199-221,241-263,278-300
Sequence
Target Sequence 
>C. ELEGANS:179561_AT
acgcccttctctgttgtacaaagtatagtggcgcgaggtcccgcgcagcgtcggccgctg
ttcattgagtgtgacctcgccttcatggaagacctaacgatcccgtgcatgcctggcgaa
gtacctgcgcggccggatttcatagtcctatcaatcgacaaaacattaccaagcctgtgc
tttgcctttatgttcgcattaatcttccctcaaattctatttttcgtcatccgaatctca
tggttcctctaccacaccgtatcccaatcccaggccacaaatcgtctccagaagcaattt
tttgtagctctatgcattcaggtgtttattccactggttttcatatccatcccagtagcc
tatatcattctagccgtctatctggactactataatcaaggtatgtatcgcggactattg
agccaaaaaccaaaaaaaaaaaatccagctgcgaacaattctgcgctaatcgcaatcgca
tttcatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGCCCTTCTCTGTTGTACAAAGTA 300 89 559 Antisense
TATAGTGGCGCGAGGTCCCGCGCAG 170 653 582 Antisense
GGCCGCTGTTCATTGAGTGTGACCT 289 543 611 Antisense
TGACCTCGCCTTCATGGAAGACCTA 153 569 630 Antisense
CGTGCATGCCTGGCGAAGTACCTGC 256 245 662 Antisense
TTACCAAGCCTGTGCTTTGCCTTTA 433 681 724 Antisense
TTCCACTGGTTTTCATATCCATCCC 422 701 887 Antisense
TATCCATCCCAGTAGCCTATATCAT 619 657 902 Antisense
ATTCTAGCCGTCTATCTGGACTACT 225 7 925 Antisense
TCCAGCTGCGAACAATTCTGCGCTA 680 589 1002 Antisense
CGCTAATCGCAATCGCATTTCATGG 490 253 1022 Antisense
Sequence Source Affymetrix Proprietary Database