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[179560_at]

Description W07A8.1 /REP_DB=WormBase Gene ID /WP=CE20159 /TR=Q9XUK6 /GB=CAB04930.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 11      6grp_cgc > 34      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 24.3
(-2.8)
A 		23.5
(-3)
A 		51.6
(3)
A 		43.1
(1.2)
A 		28
B 27
(0.9)
A 		39.6
(3)
A 		3.3
(-3)
A 		35.9
(2.4)
A 		36
C 32.8
(-0.8)
A 		17.5
(-2.3)
A 		10.1
(-3)
A 		72.5
(3)
P 		62
avr 28
(-1.7) 		26.9
(-1.9) 		21.7
(-3) 		50.5
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 51.4
(3)
A 		20.4
(-1)
A 		51.6
(3)
A 		10.9
(-2.2)
A 		4.8
(-2.9)
A 		4.4
(-3)
A 		47
B 39.2
(2.6)
A 		41.5
(3)
A 		14.2
(-1.2)
A 		3.4
(-2.9)
A 		2.9
(-3)
A 		2.9
(-3)
A 		39
C 9.3
(-3)
A 		36.1
(3)
A 		34.4
(2.6)
A 		18.2
(-1)
A 		13
(-2.2)
A 		31.1
(1.9)
A 		27
avr 33.3
(3) 		32.7
(2.8) 		33.4
(3) 		10.8
(-2.1) 		6.9
(-3) 		12.8
(-1.7) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8.8
(-0.4)
A 		5.1
(-3)
A 		13.5
(3)
A 		6.3
(-2.1)
A 		8
B 8.6
(2.2)
A 		9.8
(3)
A 		0.8
(-3)
A 		7.6
(1.5)
A 		9
C 10.8
(2)
A 		5
(-2)
A 		3.5
(-3)
A 		12.2
(3)
P 		9
avr 9.4
(3) 		6.6
(-1.8) 		5.9
(-3) 		8.7
(1.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 9.5
(2)
A 		7.3
(0.7)
A 		11.2
(3)
A 		2.8
(-2)
A 		1.4
(-2.8)
A 		1.1
(-3)
A 		10
B 13.6
(2.9)
A 		13.8
(3)
A 		3.4
(-1.8)
A 		0.9
(-3)
A 		1.2
(-2.9)
A 		1.1
(-2.9)
A 		13
C 3.4
(-3)
A 		11
(3)
A 		8.8
(1.3)
A 		3.7
(-2.8)
A 		4.2
(-2.4)
A 		10.4
(2.5)
A 		8
avr 8.8
(1.6) 		10.7
(3) 		7.8
(0.9) 		2.5
(-2.9) 		2.3
(-3) 		4.2
(-1.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179560_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13505
Sequence Type Exemplar sequence
Representative Public ID W07A8.1 NCBI
Target Description W07A8.1 /REP_DB=WormBase Gene ID /WP=CE20159 /TR=Q9XUK6 /GB=CAB04930.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075602(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075602 NCBI Caenorhabditis elegans Serpentine Receptor, class XA family member (srxa-1) (srxa-1) mRNA, complete cds. 11/11 None
SNAP00000017804 ENSEMBL cdna:SNAP chromosome:CEL140:V:20730138:20731257:1 11/11 None
W07A8.1 ENSEMBL cdna:known chromosome:CEL140:V:20730138:20731257:1 gene:W07A8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20730137-20731257(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srxa-1
Ensembl W07A8.1
Entrez Gene 189271 Entrez gene
SwissProt Q9XUK6 EMBL-EBI
WormBase CE20159 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04930 Hypothetical protein W07A8.1 [Caenorhabditis elegans] ref|NP_508003.1| Serpentine Receptor, class XA family member (srxa-1) [Caenorhabditis elegans] 1.0E-172
blast CAE61647 Hypothetical protein CBG05581 [Caenorhabditis briggsae] 1.0E-115
blast CAA93501 Hypothetical protein F56D5.10 [Caenorhabditis elegans] ref|NP_501663.1| Serpentine Receptor, class XA family member (srxa-2) [Caenorhabditis elegans] 6.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 9.9E-101
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508003.1 7 10-32,44-66,90-112,133-150,185-203,230-252,267-289
W07A8.1 7 10-32,44-66,90-112,133-150,185-203,230-252,267-289
SNAP00000017804 7 10-32,44-66,90-112,133-150,185-203,230-252,267-289
Sequence
Target Sequence 
>C. ELEGANS:179560_AT
ttcaccgtatctcaatattcttatctccattacgatccaagatttggttcaacgacaaga
atgtttcaatttattgcgttatagtttcaattctggtaattatttggcttctcgtccaac
aattatcctcatgcacattgaatttcaatgcgcttacaagttttctggaatcagcgtgtg
ctccagacagacatccaataacttggtttcagaataagttccttatatatgttccaattt
tttcaatggttgttaatgcgagcatgctctttttccaacgaatttctcggaaagtatcaa
cgagtgcagcgttagcaaaatcgatttccgagagccaaataaagagagaaaatgcgttga
tacgacaggcaatgttcattggggcatatttgagtatatatgagattctgtatcttcaaa
taagactctatccagaatcgttcaactcagcgccctttgaattccaaaccatcacgtaca
gtttgcgacttttagcagttggctctttgaatttctgcgtttattttgtgctcactaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACCGTATCTCAATATTCTTATC 532 687 347 Antisense
ATTCTTATCTCCATTACGATCCAAG 5 11 363 Antisense
CTGGTAATTATTTGGCTTCTCGTCC 81 241 439 Antisense
TCTCGTCCAACAATTATCCTCATGC 443 611 456 Antisense
GAATCAGCGTGTGCTCCAGACAGAC 464 327 514 Antisense
GCATGCTCTTTTTCCAACGAATTTC 418 309 608 Antisense
ATCCAGAATCGTTCAACTCAGCGCC 604 39 776 Antisense
TCAGCGCCCTTTGAATTCCAAACCA 254 625 793 Antisense
AACCATCACGTACAGTTTGCGACTT 660 145 813 Antisense
GTTGGCTCTTTGAATTTCTGCGTTT 61 437 844 Antisense
CTGCGTTTATTTTGTGCTCACTAAG 576 237 861 Antisense
Sequence Source Affymetrix Proprietary Database