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[179559_at]

Description F47B8.1 /REP_DB=WormBase Gene ID /WP=CE10632 /TR=Q20526 /GB=CAB01201.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 18.9
(-2.5)
A 		8.6
(-3)
A 		9.2
(-3)
A 		128.9
(3)
A 		120
B 8.2
(-3)
A 		11.5
(-2.6)
A 		7.8
(-3)
A 		59
(3)
A 		51
C 14.5
(-2.8)
A 		18.5
(-2.7)
A 		7.4
(-3)
A 		242.7
(3)
A 		235
avr 13.9
(-2.7) 		12.9
(-2.8) 		8.1
(-3) 		143.5
(3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 17.9
(-3)
A 		61.9
(2.5)
A 		65.5
(3)
A 		28.5
(-1.7)
A 		19.1
(-2.8)
A 		50.3
(1.1)
A 		48
B 17.9
(-0.6)
A 		10.9
(-2.3)
A 		8.1
(-3)
A 		13.3
(-1.7)
A 		32.3
(3)
A 		12.6
(-1.9)
A 		24
C 28.1
(-1.4)
A 		82.6
(3)
A 		8.7
(-3)
A 		23.9
(-1.8)
A 		73.6
(2.3)
A 		10.6
(-2.8)
A 		74
avr 21.3
(-3) 		51.8
(3) 		27.4
(-1.8) 		21.9
(-2.9) 		41.7
(1) 		24.5
(-2.4) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 6.9
(-1.2)
A 		1.9
(-3)
A 		2.4
(-2.8)
A 		18.9
(3)
A 		17
B 2.6
(-2.6)
A 		2.8
(-2.4)
A 		1.8
(-3)
A 		12.6
(3)
A 		11
C 4.8
(-2.7)
A 		5.3
(-2.6)
A 		2.6
(-3)
A 		40.9
(3)
A 		38
avr 4.8
(-2.3) 		3.3
(-2.7) 		2.3
(-3) 		24.1
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 3.3
(-3)
A 		22
(3)
A 		14.3
(0.5)
A 		7.2
(-1.7)
A 		5.8
(-2.2)
A 		12.3
(-0.1)
A 		19
B 6.2
(-0.7)
A 		3.6
(-2.1)
A 		2
(-3)
A 		3.5
(-2.2)
A 		13.1
(3)
A 		4.7
(-1.5)
A 		11
C 10.4
(-0.9)
A 		25.2
(3)
A 		2.2
(-3)
A 		4.8
(-2.3)
A 		23.8
(2.6)
A 		3.5
(-2.7)
A 		23
avr 6.6
(-2.3) 		16.9
(3) 		6.2
(-2.5) 		5.2
(-3) 		14.2
(1.6) 		6.8
(-2.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179559_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13182
Sequence Type Exemplar sequence
Representative Public ID F47B8.1 NCBI
Target Description F47B8.1 /REP_DB=WormBase Gene ID /WP=CE10632 /TR=Q20526 /GB=CAB01201.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074146(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074146 NCBI Caenorhabditis elegans F47B8.1 (F47B8.1) mRNA, complete cds. 11/11 None
SNAP00000011433 ENSEMBL cdna:SNAP chromosome:CEL140:V:14316347:14316921:-1 11/11 None
GENEFINDER00000011454 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14316347:14316921:-1 11/11 None
F47B8.1 ENSEMBL cdna:known chromosome:CEL140:V:14316347:14316921:-1 gene:F47B8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14316346-14316921(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B8.1
Entrez Gene 185894 Entrez gene
SwissProt Q20526 EMBL-EBI
WormBase CE10632 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01201 Hypothetical protein F47B8.1 [Caenorhabditis elegans] ref|NP_506547.1| F47B8.1 [Caenorhabditis elegans] 2.0E-80
blast CAB01200 Hypothetical protein F47B8.2 [Caenorhabditis elegans] ref|NP_506548.1| F47B8.2 [Caenorhabditis elegans] 7.0E-49
blast CAE60930 Hypothetical protein CBG04652 [Caenorhabditis briggsae] 3.0E-40
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506547.1 3 49-67,79-101,130-152
F47B8.1 3 49-67,79-101,130-152
SNAP00000011433 3 49-67,79-101,130-152
GENEFINDER00000011454 3 49-67,79-101,130-152
Sequence
Target Sequence 
>C. ELEGANS:179559_AT
ccacttggtctcgagtctccaaaactctgctgcattccagctcgtccacttgtatgtgtt
ttgtcagttttgacaatcgtcagtagaattgctaatatgagtaaatccaccgatgtatcc
cgtgtattcgatagtttctttctatttctcaatctccttttgttgtttggggccgtctgg
aacaatgagccagccttgatatggtctcagagaattatcgccgttgtagttgttcttgtt
gtgattcaattcatgatttggcctgttcttttcgctagtttagctgcttctggccggttg
aaattggaaaacgttctttcaaaaactgaatatgaaaaggaggaaatgtttcaaaaggga
ttattggcaggatatgttgcagaatttgtattagtcttggcagtcggagttgaaatcctc
aagtatgttcttatcaaccgtctctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACTTGGTCTCGAGTCTCCAAAAC 11 275 34 Antisense
TCTCCAAAACTCTGCTGCATTCCAG 91 611 49 Antisense
TCCAGCTCGTCCACTTGTATGTGTT 445 589 69 Antisense
AATCCACCGATGTATCCCGTGTATT 409 167 137 Antisense
TCTATTTCTCAATCTCCTTTTGTTG 378 615 174 Antisense
GAGCCAGCCTTGATATGGTCTCAGA 386 385 220 Antisense
GGTCTCAGAGAATTATCGCCGTTGT 511 503 236 Antisense
ATCGCCGTTGTAGTTGTTCTTGTTG 290 37 250 Antisense
TCATGATTTGGCCTGTTCTTTTCGC 215 623 284 Antisense
TTCGCTAGTTTAGCTGCTTCTGGCC 176 695 304 Antisense
AGTATGTTCTTATCAACCGTCTCTG 217 63 455 Antisense
Sequence Source Affymetrix Proprietary Database