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[179558_at]

Description Y1A5A.2 /REP_DB=WormBase Gene ID /WP=CE20176 /TR=Q9XXT6 /GB=CAA15979.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 27      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 35.2
(-1.7)
A 		45.9
(0.8)
A 		29.5
(-3)
A 		55.5
(3)
A 		26
B 29.2
(0.3)
A 		47.9
(3)
A 		20.8
(-0.9)
A 		5.8
(-3)
A 		42
C 8.4
(-2.1)
A 		3.5
(-3)
A 		18.7
(-0.1)
A 		34.9
(3)
A 		31
avr 24.3
(-2.2) 		32.4
(3) 		23
(-3) 		32.1
(2.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 55.6
(3)
A 		6.3
(-2.6)
A 		3.1
(-3)
A 		28.3
(-0.1)
A 		25.2
(-0.5)
A 		19.5
(-1.1)
A 		53
B 2.9
(-2.9)
A 		17.3
(-1.1)
A 		51.1
(3)
P 		2.1
(-3)
A 		22.8
(-0.5)
A 		32.7
(0.7)
A 		49
C 18.6
(2.4)
A 		20.4
(3)
A 		6.4
(-1.7)
A 		20.3
(3)
A 		2.6
(-3)
A 		3.6
(-2.7)
A 		18
avr 25.7
(3) 		14.7
(-3) 		20.2
(0) 		16.9
(-1.8) 		16.9
(-1.8) 		18.6
(-0.9) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.8
(3)
A 		10
(-0.3)
A 		7.7
(-3)
A 		8.1
(-2.5)
A 		5
B 9.3
(1.6)
A 		11.8
(3)
A 		4.8
(-1)
A 		1.2
(-3)
A 		11
C 2.8
(-1)
A 		1
(-3)
A 		6.5
(3)
A 		5.9
(2.3)
A 		6
avr 8.3
(3) 		7.6
(1.7) 		6.3
(-0.8) 		5.1
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 10.2
(3)
A 		2.2
(-2.1)
A 		0.7
(-3)
A 		7.2
(1.1)
A 		7.6
(1.4)
A 		4.7
(-0.5)
A 		10
B 1
(-2.8)
A 		5.8
(-0.4)
A 		12.4
(3)
P 		0.6
(-3)
A 		9.3
(1.4)
A 		12.2
(2.9)
A 		12
C 6.9
(3)
A 		6.2
(2.3)
A 		1.6
(-2.2)
A 		4.1
(0.2)
A 		0.8
(-3)
A 		1.2
(-2.6)
A 		6
avr 6
(3) 		4.7
(-0.9) 		4.9
(-0.3) 		4
(-3) 		5.9
(2.7) 		6
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179558_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6353
Sequence Type Exemplar sequence
Representative Public ID Y1A5A.2 NCBI
Target Description Y1A5A.2 /REP_DB=WormBase Gene ID /WP=CE20176 /TR=Q9XXT6 /GB=CAA15979.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065399(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065399 NCBI Caenorhabditis elegans Y1A5A.2 (Y1A5A.2) mRNA, complete cds. 11/11 None
Y1A5A.2 ENSEMBL cdna:known chromosome:CEL140:III:3984342:3984645:-1 gene:Y1A5A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3984341-3984645(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y1A5A.2
Entrez Gene 189349 Entrez gene
SwissProt Q9XXT6 EMBL-EBI
WormBase CE20176 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA15979 Hypothetical protein Y1A5A.2 [Caenorhabditis elegans] ref|NP_497800.1| Y1A5A.2 [Caenorhabditis elegans] 1.0E-42
Sequence
Target Sequence 
>C. ELEGANS:179558_AT
ggagaattgccaatgacctcctccttctcctctttgttcccccattttccgccgtgccag
atgtcttttcagcaaaagcattgaaacgtaattcgagaagtgtgagtgttgtgtatgaga
catacacacacacttgttgttgcatctccctcggtgccagtgcccacccaacgcggtctc
cgcgcgttccgcgaaaacaacacacggcgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAATTGCCAATGACCTCCTCCT 276 519 23 Antisense
CCGTGCCAGATGTCTTTTCAGCAAA 473 265 74 Antisense
GATGTCTTTTCAGCAAAAGCATTGA 522 409 82 Antisense
AAAGCATTGAAACGTAATTCGAGAA 89 123 97 Antisense
ATTCGAGAAGTGTGAGTGTTGTGTA 365 9 113 Antisense
GAAGTGTGAGTGTTGTGTATGAGAC 253 333 119 Antisense
GTATGAGACATACACACACACTTGT 101 455 135 Antisense
GACATACACACACACTTGTTGTTGC 80 371 141 Antisense
CACACACACTTGTTGTTGCATCTCC 384 195 147 Antisense
TCTCCGCGCGTTCCGCGAAAACAAC 12 609 199 Antisense
TCCGCGAAAACAACACACGGCGCCA 581 595 210 Antisense
Sequence Source Affymetrix Proprietary Database