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[179556_s_at]

Description R151.8 /REP_DB=WormBase Gene ID /WP=CE27201 /TR=Q21999 /GB=AAK29857.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 44      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 72      6grp_total > 0      4grp_total > 54      6grp_total_sub > Hat      6grp_high1_sub > 02      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 418.1
(3)
P 		320.1
(-0)
P 		284.2
(-1.1)
P 		223.4
(-3)
P 		195
B 379.4
(3)
P 		253.9
(-1.8)
P 		223.6
(-3)
P 		240.7
(-2.3)
P 		156
C 392.3
(3)
P 		287.2
(0.3)
P 		247.9
(-0.8)
P 		162.9
(-3)
P 		229
avr 396.6
(3) 		287.1
(-0.5) 		251.9
(-1.6) 		209
(-3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 405.2
(2.1)
P 		428
(3)
P 		281.2
(-3)
P 		358.3
(0.2)
P 		416.4
(2.5)
P 		384.9
(1.2)
P 		147
B 325.1
(-3)
P 		404.1
(2)
P 		420.7
(3)
P 		361.3
(-0.7)
P 		349.8
(-1.4)
P 		355.4
(-1.1)
P 		96
C 335.6
(-2.5)
P 		444.7
(2.1)
P 		400.2
(0.3)
P 		464.9
(3)
P 		322.9
(-3)
P 		439
(1.9)
P 		142
avr 355.3
(-3) 		425.6
(3) 		367.4
(-2) 		394.8
(0.4) 		363
(-2.3) 		393.1
(0.2) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 152.2
(3)
P 		69.5
(-1.2)
P 		74.3
(-0.9)
P 		32.7
(-3)
P 		120
B 121
(3)
P 		62.7
(-2)
P 		51.8
(-3)
P 		51.3
(-3)
P 		70
C 129.9
(3)
P 		82.6
(0.2)
P 		86.4
(0.5)
P 		27.5
(-3)
P 		102
avr 134.4
(3) 		71.6
(-0.9) 		70.8
(-0.9) 		37.2
(-3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 74.7
(-2.1)
P 		152.2
(3)
P 		61.2
(-3)
P 		90.9
(-1)
P 		125.7
(1.3)
P 		93.7
(-0.9)
P 		91
B 113.1
(-0.8)
P 		134.5
(2)
P 		102.2
(-2.2)
P 		95.7
(-3)
P 		142.1
(3)
P 		132.5
(1.8)
P 		46
C 124.4
(0.5)
P 		135.7
(1.7)
P 		101.9
(-2.1)
P 		93.5
(-3)
P 		104.5
(-1.8)
P 		147
(3)
P 		54
avr 104.1
(-1.2) 		140.8
(3) 		88.4
(-3) 		93.4
(-2.4) 		124.1
(1.1) 		124.4
(1.1) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179556_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6909
Sequence Type Exemplar sequence
Representative Public ID R151.8 NCBI
Target Description R151.8 /REP_DB=WormBase Gene ID /WP=CE27201 /TR=Q21999 /GB=AAK29857.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066191(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066191 NCBI Caenorhabditis elegans R151.8 (R151.8) mRNA, complete cds. 11/11 None
R151.8 ENSEMBL cdna:known chromosome:CEL140:III:7226727:7229711:-1 gene:R151.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7226890-7230853(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R151.8
Entrez Gene 176020 Entrez gene
SwissProt Q21999 EMBL-EBI
WormBase CE27201 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29857 Hypothetical protein R151.8 [Caenorhabditis elegans] ref|NP_498592.1| R151.8 [Caenorhabditis elegans] 0.0
blast T16768 hypothetical protein R151.8 - Caenorhabditis elegans 0.0
blast CAE57603 Hypothetical protein CBG00584 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179556_S_AT
acccggagagtcaagttccgctcctgcgattcaggatcttatggtgaaacaagtgttcgc
agcaccaaaaactacaataattccgagaagaacctctacatattcggaaaagaaatctct
acttctatcaaatgctcataaaatatcagaactcactgcaacttctgactcaccaagtac
aagtactcaaggaccaactgatttctcatctgtcgtgttctctccaacaaaacgaagtgc
agatcctgaattgcaaagaaaaagaaatgatgcatttttatcatctctacgtacaccaga
tccaactccgaagaaagacagcattatgcaacaatatttcggtggagatctatcaatgtc
acctggatcgacacgacatgcatctcatttggaaactcctggaggaaataacacaacaat
tgacttcaccgacatgatgtaccagaatattacgaatcacggagatctgactacaatttc
taatccggctctgcatttctcagttaatgaagttcacgaaaaatatcacgatatgatttc
ttcatcgcaagatagtcaggattacattctatcgcactttcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCCGGAGAGTCAAGTTCCGCTCCT 20 89 2229 Antisense
AAATCTCTACTTCTATCAAATGCTC 144 117 2341 Antisense
AGAACTCACTGCAACTTCTGACTCA 605 73 2376 Antisense
GGACCAACTGATTTCTCATCTGTCG 346 523 2419 Antisense
CTGTCGTGTTCTCTCCAACAAAACG 38 239 2438 Antisense
ATTTTTATCATCTCTACGTACACCA 502 15 2502 Antisense
TACACCAGATCCAACTCCGAAGAAA 419 641 2520 Antisense
TGGAGATCTATCAATGTCACCTGGA 411 549 2571 Antisense
GTCACCTGGATCGACACGACATGCA 531 465 2586 Antisense
TGACTACAATTTCTAATCCGGCTCT 509 569 2696 Antisense
GGATTACATTCTATCGCACTTTCAG 461 509 2787 Antisense
Sequence Source Affymetrix Proprietary Database