[Home] | [Total List]

[179555_at]

Description W09D6.5 /REP_DB=WormBase Gene ID /WP=CE19019 /TR=Q9XUJ2 /GB=CAB04946.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 63      6grp_total > 83      4grp_total > 17      6grp_highest_sub > 04_05      6grp_cgc > 87      6grp_high1_sub > 04_05      6grp_cgc_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 411
1 2 3 4 range
A 519
(-3)
P 		651
(-0.7)
P 		523.9
(-2.9)
P 		861.6
(3)
P 		343
B 526.6
(-3)
P 		586.3
(-1.5)
P 		596.2
(-1.3)
P 		770
(3)
P 		243
C 450.3
(-3)
P 		594.8
(-0.8)
P 		562.9
(-1.3)
P 		853
(3)
P 		403
avr 498.6
(-3) 		610.7
(-1) 		561
(-1.9) 		828.2
(3) 		330

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 532
1 2 3 4 5 6 range
A 357.6
(-3)
P 		414.8
(-2.3)
P 		415.6
(-2.3)
P 		668.1
(0.7)
P 		867.5
(3)
P 		483.7
(-1.5)
P 		510
B 336
(-3)
P 		446.8
(-1)
P 		493.5
(-0.2)
P 		671.1
(3)
P 		615.8
(2)
P 		449.9
(-1)
P 		335
C 398.7
(-3)
P 		424.4
(-2.5)
P 		416.7
(-2.6)
P 		631
(1.6)
P 		704.2
(3)
P 		567.3
(0.3)
P 		306
avr 364.1
(-3) 		428.7
(-1.9) 		441.9
(-1.7) 		656.7
(1.8) 		729.2
(3) 		500.3
(-0.8) 		365
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 189
(3)
P 		141.3
(-1.6)
P 		136.9
(-2)
P 		126.1
(-3)
P 		63
B 167.9
(3)
P 		144.8
(-1.7)
P 		138.2
(-3)
P 		164.1
(2.2)
P 		30
C 149.1
(-2.4)
P 		171
(0.1)
P 		196.2
(3)
P 		143.8
(-3)
P 		52
avr 168.7
(3) 		152.4
(-1.1) 		157.1
(0.1) 		144.7
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 65.9
(-3)
P 		147.5
(-0.5)
P 		90.5
(-2.2)
P 		169.4
(0.2)
P 		261.8
(3)
P 		117.8
(-1.4)
P 		196
B 116.9
(-3)
P 		148.7
(-1.6)
P 		119.8
(-2.9)
P 		177.8
(-0.3)
P 		250.2
(3)
P 		167.8
(-0.7)
P 		133
C 147.8
(-0.9)
P 		129.5
(-1.8)
P 		106.1
(-3)
P 		126.9
(-2)
P 		227.9
(3)
P 		189.9
(1.1)
P 		122
avr 110.2
(-2.8) 		141.9
(-1.5) 		105.5
(-3) 		158
(-0.8) 		246.6
(3) 		158.5
(-0.7) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179555_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6851
Sequence Type Exemplar sequence
Representative Public ID W09D6.5 NCBI
Target Description W09D6.5 /REP_DB=WormBase Gene ID /WP=CE19019 /TR=Q9XUJ2 /GB=CAB04946.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067027(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067027 NCBI Caenorhabditis elegans W09D6.5 (W09D6.5) mRNA, complete cds. 11/11 None
GENEFINDER00000027416 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11088367:11091243:1 11/11 None
W09D6.5 ENSEMBL cdna:known chromosome:CEL140:III:11088364:11091473:1 gene:W09D6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027410 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11088362-11091239(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W09D6.5
Entrez Gene 176539 Entrez gene
SwissProt Q9XUJ2 EMBL-EBI
WormBase CE19019 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04946 Hypothetical protein W09D6.5 [Caenorhabditis elegans] ref|NP_499428.1| W09D6.5 [Caenorhabditis elegans] 1.0E-121
blast CAB04946 Hypothetical protein W09D6.5 [Caenorhabditis elegans] ref|NP_499428.1| W09D6.5 [Caenorhabditis elegans] 1.0E-114
blast CAE67627 Hypothetical protein CBG13181 [Caenorhabditis briggsae] 2.0E-89
blast CAE67627 Hypothetical protein CBG13181 [Caenorhabditis briggsae] 5.0E-85
Sequence
Target Sequence 
>C. ELEGANS:179555_AT
ttatggataccgttatctcggctccgccttcttctctcaaggagaagtccccccaatcca
atcgtcaaacgaaatcaaacaaaaaatcgtcaccaccgccacgtaaatcgccagtgatga
cgtcatcataccaagtacagtacccaaattcgccgcgagaccttcatctcgtatcgtcga
caccatcgtcacgctcctcgtcctcaatgagctcaaacaatggaattgtgtcaccgacgt
tgaccgtctcatcgccacgtatcgtcaagggcggtccacagaagtattcgatgtcacgcc
cgaacgcgtttgctccgatgattgcacaatctgatgagaaggagtgtatttgtgatcgga
aaaatacacatgtagtttgtaaacgatgtggctacgaatgtgttggccgagtgcaagtga
catgcggcaagcatcctctgatccttgcgctcaatgatctccgcgaatgcccgaatcccg
tgtgccatagcgttcagctgctcgagtgcgacgagctcgacgatcaggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATGGATACCGTTATCTCGGCTCC 521 679 191 Antisense
ACCGCCACGTAAATCGCCAGTGATG 429 87 285 Antisense
CAAGTACAGTACCCAAATTCGCCGC 4 185 322 Antisense
CGCGAGACCTTCATCTCGTATCGTC 2 255 344 Antisense
CTCCTCGTCCTCAATGAGCTCAAAC 274 235 384 Antisense
AATTGTGTCACCGACGTTGACCGTC 258 179 414 Antisense
GCCACGTATCGTCAAGGGCGGTCCA 626 277 444 Antisense
CGCGTTTGCTCCGATGATTGCACAA 177 257 495 Antisense
TGACATGCGGCAAGCATCCTCTGAT 339 565 608 Antisense
CTTGCGCTCAATGATCTCCGCGAAT 12 219 634 Antisense
GTGCGACGAGCTCGACGATCAGGAT 387 477 696 Antisense
Sequence Source Affymetrix Proprietary Database