[Home] | [Total List]

[179554_at]

Description F44F4.1 /REP_DB=WormBase Gene ID /WP=CE00996 /TR=Q20401 /GB=CAA85452.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 13      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 51      6grp_total > 24      4grp_total > 30      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 357
1 2 3 4 range
A 558.2
(1.8)
P 		493.7
(-1.1)
P 		453.4
(-3)
P 		583.9
(3)
P 		131
B 607.2
(3)
P 		472.1
(-3)
P 		500.3
(-1.7)
P 		499
(-1.8)
P 		135
C 696.7
(3)
P 		536.8
(0.3)
P 		340
(-3)
P 		557.6
(0.7)
P 		357
avr 620.7
(3) 		500.9
(-0.8) 		431.2
(-3) 		546.8
(0.7) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 565
1 2 3 4 5 6 range
A 580.2
(0.4)
P 		797.4
(3)
P 		695.7
(1.8)
P 		438
(-1.4)
P 		330.3
(-2.7)
P 		303.6
(-3)
P 		494
B 849.9
(3)
P 		827
(2.8)
P 		555.5
(-0.1)
P 		406.3
(-1.7)
P 		354.2
(-2.3)
P 		284.7
(-3)
P 		565
C 717.2
(2.3)
P 		761.4
(3)
P 		463.3
(-1.6)
P 		433.8
(-2.1)
P 		376.6
(-3)
P 		389.1
(-2.8)
P 		385
avr 715.8
(2) 		795.3
(3) 		571.5
(0.1) 		426
(-1.7) 		353.7
(-2.6) 		325.8
(-3) 		470
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 203.2
(3)
P 		107.2
(-1.9)
P 		118.5
(-1.3)
P 		85.5
(-3)
P 		118
B 193.6
(3)
P 		116.6
(-2.3)
P 		115.9
(-2.3)
P 		106.3
(-3)
P 		87
C 230.6
(3)
P 		154.3
(-0.4)
P 		118.5
(-1.9)
P 		94
(-3)
P 		137
avr 209.1
(3) 		126
(-1.4) 		117.6
(-1.8) 		95.3
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 106.9
(-2.1)
P 		283.6
(3)
P 		151.5
(-0.8)
P 		111.1
(-1.9)
P 		99.7
(-2.3)
P 		73.9
(-3)
P 		210
B 295.7
(3)
P 		275.3
(2.4)
P 		134.9
(-2.1)
P 		107.6
(-3)
P 		143.9
(-1.8)
P 		106.2
(-3)
P 		190
C 265.9
(3)
P 		232.3
(1.9)
P 		117.9
(-2)
P 		87.2
(-3)
P 		121.8
(-1.8)
P 		130.3
(-1.6)
P 		179
avr 222.8
(1.5) 		263.7
(3) 		134.8
(-1.8) 		102
(-3) 		121.8
(-2.3) 		103.5
(-2.9) 		162
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179554_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3410
Sequence Type Exemplar sequence
Representative Public ID F44F4.1 NCBI
Target Description F44F4.1 /REP_DB=WormBase Gene ID /WP=CE00996 /TR=Q20401 /GB=CAA85452.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063939(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063939 NCBI Caenorhabditis elegans F44F4.1 (F44F4.1) mRNA, complete cds. 11/11 None
F44F4.1 ENSEMBL cdna:known chromosome:CEL140:II:10880839:10882300:1 gene:F44F4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037178 7/11 Cross Hyb Matching Probes None
GENEFINDER00000037200 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10880835-10882297(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44F4.1
Entrez Gene 185748 Entrez gene
SwissProt Q20401 EMBL-EBI
WormBase CE00996 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85452 Hypothetical protein F44F4.1 [Caenorhabditis elegans] ref|NP_496340.1| F44F4.1 [Caenorhabditis elegans] 8.0E-81
blast CAE59590 Hypothetical protein CBG02997 [Caenorhabditis briggsae] 3.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496340.1 2 10-32,160-182
F44F4.1 2 10-32,160-182
Sequence
Target Sequence 
>C. ELEGANS:179554_AT
ttcttgttcttttgtgcctattgttacttccagatgttacttctactcccgcttcttcta
tttccatcagccacattggctctttatgattgttttagtggatttgtgggacgaatgcag
gcatcagttgaagaaaatcatttccacataaatgacaccgcaatgtgctcggcaatgtat
tgtataaaagtgattctacattcagctctagacgacgatggaattttccagcaaggaatc
tcctctcgatgtgcctataccggaggtgatcgtcaagtttgccaaaagagcgaaggaaaa
tgtcaggatatttcattttatgatggaatgaaaggaaatttttcattctgctgctgtaaa
gaaaacaagtgcaacgtggccactcaaaccgaattaaactcgatatactcaatgaattca
agatctgcacgaaaaaccaatggctcatatggttaccctctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTGTTCTTTTGTGCCTATTGTT 596 689 49 Antisense
TTGTGCCTATTGTTACTTCCAGATG 119 709 60 Antisense
ACTTCCAGATGTTACTTCTACTCCC 620 103 74 Antisense
CTTCTATTTCCATCAGCCACATTGG 341 221 103 Antisense
GCCACATTGGCTCTTTATGATTGTT 239 279 118 Antisense
GACACCGCAATGTGCTCGGCAATGT 20 369 202 Antisense
GATTCTACATTCAGCTCTAGACGAC 566 431 240 Antisense
TCCAGCAAGGAATCTCCTCTCGATG 710 587 275 Antisense
CTCTCGATGTGCCTATACCGGAGGT 372 231 291 Antisense
GGAGGTGATCGTCAAGTTTGCCAAA 379 515 310 Antisense
CAATGGCTCATATGGTTACCCTCTT 528 183 486 Antisense
Sequence Source Affymetrix Proprietary Database