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[179551_at]

Description F31D4.2 /REP_DB=WormBase Gene ID /WP=CE15928 /TR=O45417 /GB=CAB07370.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 46      4grp_highest_8_8 > 44      4grp_high_8_8 > 16      6grp_highest_nonorm > 71      6grp_total > 36      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 481.3
(3)
P
252.8
(-3)
P
273.2
(-2.5)
P
430.7
(1.7)
P
229
B 507.5
(3)
P
278
(-3)
P
329.4
(-1.7)
P
366.4
(-0.7)
P
230
C 449.2
(3)
P
351.2
(-1)
P
302.5
(-3)
P
353.1
(-0.9)
P
147
avr 479.3
(3)
294
(-3)
301.7
(-2.8)
383.4
(-0.1)
185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 284
1 2 3 4 5 6 range
A 380.3
(1.3)
P
445.1
(3)
P
234.2
(-2.6)
P
263.8
(-1.8)
P
219.6
(-3)
P
391.1
(1.6)
P
226
B 368.3
(2.5)
P
383.8
(3)
P
323
(1.1)
P
324.9
(1.2)
P
189
(-3)
P
353.2
(2.1)
P
195
C 457.6
(3)
P
348.1
(0.7)
P
374.7
(1.2)
P
288.3
(-0.6)
P
173.9
(-3)
P
316.2
(0)
P
284
avr 402.1
(3)
392.3
(2.7)
310.6
(0.4)
292.3
(-0.2)
194.2
(-3)
353.5
(1.6)
208
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 175.2
(3)
P
54.9
(-3)
P
71.4
(-2.2)
P
63.1
(-2.6)
P
120
B 161.8
(3)
P
68.6
(-3)
P
76.3
(-2.5)
P
78.1
(-2.4)
P
93
C 148.7
(3)
P
101
(-0.2)
P
105.4
(0.1)
P
59.5
(-3)
P
89
avr 161.9
(3)
74.8
(-2.5)
84.4
(-1.9)
66.9
(-3)
95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 70.1
(-1.9)
P
158.3
(3)
P
51
(-3)
P
66.9
(-2.1)
P
66.3
(-2.1)
P
95.2
(-0.5)
P
107
B 128.2
(2.6)
P
127.8
(2.6)
P
78.4
(-2.8)
P
86.1
(-2)
P
76.8
(-3)
P
131.7
(3)
P
55
C 169.6
(3)
P
106.2
(-0.4)
P
95.4
(-0.9)
P
58
(-2.9)
P
56.3
(-3)
P
105.9
(-0.4)
P
113
avr 122.6
(2.2)
130.8
(3)
74.9
(-2.2)
70.3
(-2.6)
66.5
(-3)
110.9
(1.1)
64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179551_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13864
Sequence Type Exemplar sequence
Representative Public ID F31D4.2 NCBI
Target Description F31D4.2 /REP_DB=WormBase Gene ID /WP=CE15928 /TR=O45417 /GB=CAB07370.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075624(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_075624 NCBI Caenorhabditis elegans F31D4.2 (F31D4.2) mRNA, complete cds. 11/11 None
SNAP00000041981 ENSEMBL cdna:SNAP chromosome:CEL140:V:20840191:20843577:-1 11/11 None
GENEFINDER00000041989 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20840191:20843577:-1 11/11 None
F31D4.2 ENSEMBL cdna:known chromosome:CEL140:V:20839624:20843597:-1 gene:F31D4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20840190-20843577(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F31D4.2
Entrez Gene 180370 Entrez gene
SwissProt O45417 EMBL-EBI
WormBase CE15928 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604473_AT similar to F31D4.2 cfa
CANINE_2:CFA.18395.1.S1_S_AT similar to F31D4.2 cfa
CANINE_2:CFA.642.1.S1_AT similar to F31D4.2 cfa
CANINE_2:CFAAFFX.1597.1.S1_S_AT similar to F31D4.2 cfa
DROSGENOME1:153489_AT dm
DROSOPHILA_2:1633513_A_AT dm
CHICKEN:GGAAFFX.8210.1.S1_S_AT similar to chromosome 6 open reading frame 211 gga
HU35KSUBA:D31263_AT chromosome 6 open reading frame 211 hs
HU35KSUBA:RC_AA403121_AT chromosome 6 open reading frame 211 hs
HG-U133A:218195_AT chromosome 6 open reading frame 211 hs
HG-U133_PLUS_2:218195_AT chromosome 6 open reading frame 211 hs
HG-U133A_2:218195_AT chromosome 6 open reading frame 211 hs
U133_X3P:G13375745_3P_AT chromosome 6 open reading frame 211 hs
HG-U95B:54627_AT chromosome 6 open reading frame 211 hs
MOUSE430A_2:1421495_A_AT RIKEN cDNA 1700052N19 gene mm
MOUSE430_2:1421495_A_AT RIKEN cDNA 1700052N19 gene mm
MOE430A:1421495_A_AT RIKEN cDNA 1700052N19 gene mm
MG-U74BV2:111361_AT RIKEN cDNA 1700052N19 gene mm
MG-U74CV2:171463_R_AT RIKEN cDNA 1700052N19 gene mm
MG-U74CV2:170463_R_AT RIKEN cDNA 1700052N19 gene mm
MOE430A:1454879_S_AT RIKEN cDNA 1700052N19 gene mm
MOUSE430A_2:1454879_S_AT RIKEN cDNA 1700052N19 gene mm
MOUSE430_2:1454879_S_AT RIKEN cDNA 1700052N19 gene mm
MOE430B:1441406_AT RIKEN cDNA 1700052N19 gene mm
MOUSE430_2:1441406_AT RIKEN cDNA 1700052N19 gene mm
RG-U34B:RC_AA849975_AT similar to RIKEN cDNA 1700052N19 (predicted) rn
RAE230B:1393027_AT similar to RIKEN cDNA 1700052N19 (predicted) rn
RAT230_2:1393027_AT similar to RIKEN cDNA 1700052N19 (predicted) rn
RAE230B:1385741_AT similar to RIKEN cDNA 1700052N19 (predicted) rn
RAT230_2:1385741_AT similar to RIKEN cDNA 1700052N19 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB07370 Hypothetical protein F31D4.2 [Caenorhabditis elegans] ref|NP_508025.1| F31D4.2 [Caenorhabditis elegans] 0.0
blast CAE60765 Hypothetical protein CBG04453 [Caenorhabditis briggsae] 1.0E-176
blast AAH79682 MGC79138 protein [Xenopus laevis] 3.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR002791 EMBL-EBI Protein of unknown function DUF89 1.0E-126
Sequence
Target Sequence
>C. ELEGANS:179551_AT
acctgatcgtcgccgagtttttcatctctcgtggttttgccgataaagttgtaattcatg
gaaaagcgatcccgtggttcgtgagtgacgtcactaaacctgatctcgattggacaattg
aacagctgaaaaatggtgaaaatattggagaagagagtcgagcattgggagaaaaactcg
aaaaacggatgaaatcgggccaaattgtgtatcaagaccatcttttctggatatccccac
atgcttattatgctatggagaaggaagctcgcgatttgtatgatgatttgaaaaattcgt
cgttaataatcttcaaaggcgacttgaattaccgtaagcttgttggtgatcgggactggg
atctcgatacttcgttcaaaaccgcctgtcgtggatttgcaccgtgtccatttatggcgt
tgcgtactcttaaagctgaaactgttgccggattgagtgaggagtccatcgctattttat
t


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
ACCTGATCGTCGCCGAGTTTTTCAT 209 89 812 Antisense
TTCATCTCTCGTGGTTTTGCCGATA 428 689 832 Antisense
GATCCCGTGGTTCGTGAGTGACGTC 350 415 879 Antisense
GTGACGTCACTAAACCTGATCTCGA 469 483 896 Antisense
AAGACCATCTTTTCTGGATATCCCC 612 153 1025 Antisense
GGATATCCCCACATGCTTATTATGC 200 511 1040 Antisense
GACTGGGATCTCGATACTTCGTTCA 94 377 1165 Antisense
CAAAACCGCCTGTCGTGGATTTGCA 250 189 1188 Antisense
ATTTGCACCGTGTCCATTTATGGCG 328 17 1206 Antisense
ATGGCGTTGCGTACTCTTAAAGCTG 402 53 1225 Antisense
GTGAGGAGTCCATCGCTATTTTATT 328 483 1268 Antisense
Sequence Source Affymetrix Proprietary Database