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[179550_at]

Description F28B1.1 /REP_DB=WormBase Gene ID /WP=CE15913 /TR=O45411 /GB=CAB04208.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 2.4
(-2.8)
A 		1.5
(-3)
A 		1.9
(-2.9)
A 		25.2
(3)
A 		24
B 4.8
(-0.7)
A 		9.2
(3)
A 		2.3
(-2.8)
A 		2
(-3)
A 		7
C 2
(-0.8)
A 		2.6
(1.1)
A 		1.3
(-3)
A 		3.2
(3)
A 		2
avr 3.1
(-2.1) 		4.4
(-1.1) 		1.8
(-3) 		10.1
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 3.7
(3)
A 		2.6
(-0.7)
A 		3.4
(2)
A 		2.7
(-0.3)
A 		2.5
(-1)
A 		1.9
(-3)
A 		2
B 2.6
(0.8)
A 		3.4
(3)
A 		1.4
(-2.5)
A 		2.9
(1.6)
A 		1.2
(-3)
A 		2.6
(0.8)
A 		2
C 4
(3)
A 		3.3
(0.5)
A 		2.3
(-3)
A 		3.6
(1.6)
A 		3.2
(0.2)
A 		2.3
(-3)
A 		2
avr 3.4
(3) 		3.1
(1.4) 		2.4
(-2.5) 		3.1
(1.4) 		2.3
(-3) 		2.3
(-3) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.9
(-1.9)
A 		0.3
(-3)
A 		0.5
(-2.6)
A 		3.7
(3)
A 		3
B 1.5
(0.5)
A 		2.3
(3)
A 		0.5
(-2.7)
A 		0.4
(-3)
A 		2
C 0.7
(3)
A 		0.7
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0
avr 1
(0) 		1.1
(0.6) 		0.5
(-3) 		1.5
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.7
(-0)
A 		0.9
(3)
A 		0.7
(-0)
A 		0.7
(-0)
A 		0.8
(1.5)
A 		0.5
(-3)
A 		0
B 0.9
(1.5)
A 		1.1
(3)
A 		0.3
(-3)
A 		0.8
(0.8)
A 		0.5
(-1.5)
A 		1
(2.3)
A 		1
C 1.5
(3)
A 		1
(-0.3)
A 		0.6
(-3)
A 		0.7
(-2.3)
A 		1
(-0.3)
A 		0.8
(-1.7)
A 		1
avr 1
(3) 		1
(3) 		0.5
(-3) 		0.7
(-0.6) 		0.8
(0.6) 		0.8
(0.6) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179550_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13872
Sequence Type Exemplar sequence
Representative Public ID F28B1.1 NCBI
Target Description F28B1.1 /REP_DB=WormBase Gene ID /WP=CE15913 /TR=O45411 /GB=CAB04208.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074915(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074915 NCBI Caenorhabditis elegans F28B1.1 (F28B1.1) mRNA, complete cds. 11/11 None
SNAP00000006325 ENSEMBL cdna:SNAP chromosome:CEL140:V:17045254:17046361:1 11/11 None
GENEFINDER00000006333 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17043317:17046361:1 11/11 None
F28B1.1 ENSEMBL cdna:known chromosome:CEL140:V:17043401:17046361:1 gene:F28B1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17043400-17046361(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F28B1.1
Entrez Gene 185039 Entrez gene
SwissProt O45411 EMBL-EBI
WormBase CE15913 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04208 Hypothetical protein F28B1.1 [Caenorhabditis elegans] ref|NP_507316.1| F28B1.1 [Caenorhabditis elegans] 0.0
blast CAB04209 Hypothetical protein F28B1.2 [Caenorhabditis elegans] ref|NP_507317.1| F28B1.2 [Caenorhabditis elegans] 1.0E-128
blast CAB03916 Hypothetical protein C25F9.8 [Caenorhabditis elegans] ref|NP_507774.1| C25F9.8 [Caenorhabditis elegans] 4.0E-77
Sequence
Target Sequence 
>C. ELEGANS:179550_AT
aatcaaatgccattggccactgaccaatgtggtttcatcaatgcaagatgctctgccagt
gacgacaagccatttttatattctactacaactgacgcaatatatagcggaaaaggcaaa
ggaggttatgcttcatcgattcatcgttatgaagatcttctttgtgtcagagggaaagaa
ctcacatggtacattggaaacttgaaattagacaatctagtagtaaaatgcaataccgat
gagagggcgcagtgggattgtgggatgtttaaagctgtcatcagtttgcaagaatttaaa
ccgcatcacataattggtgtctattcacaagcacagcttgggaccattttgtggatgtta
ggcgatcaatttcagatcatctgcgagcctgaatacaaaccagtggttttcagtgcaaac
aatgaacccattgagatctccgaccaggcaccagcgattgaatgcgcctacaatccaatg
accaactttgcctcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCAAATGCCATTGGCCACTGACC 477 171 1015 Antisense
ATCAATGCAAGATGCTCTGCCAGTG 314 25 1051 Antisense
TCTGCCAGTGACGACAAGCCATTTT 433 607 1066 Antisense
GGAGGTTATGCTTCATCGATTCATC 239 517 1135 Antisense
GAGAGGGCGCAGTGGGATTGTGGGA 30 397 1255 Antisense
ATTGGTGTCTATTCACAAGCACAGC 437 3 1327 Antisense
CAAGCACAGCTTGGGACCATTTTGT 477 185 1342 Antisense
CAGATCATCTGCGAGCCTGAATACA 182 207 1387 Antisense
ATGAACCCATTGAGATCTCCGACCA 238 43 1436 Antisense
GGCACCAGCGATTGAATGCGCCTAC 684 535 1461 Antisense
ATCCAATGACCAACTTTGCCTCAAT 664 39 1487 Antisense
Sequence Source Affymetrix Proprietary Database