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[179549_at]

Description C18D4.9 /REP_DB=WormBase Gene ID /WP=CE18511 /TR=Q9XVD7 /GB=CAB03906.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 17      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 4.6
(-3)
A 		41.1
(2.2)
A 		4.4
(-3)
A 		46.9
(3)
A 		43
B 14
(-0.7)
A 		4.4
(-3)
A 		29.7
(3)
A 		5.6
(-2.7)
A 		25
C 4.1
(-2.7)
A 		2.1
(-3)
A 		5.2
(-2.5)
A 		38.2
(3)
A 		36
avr 7.6
(-3) 		15.9
(-0.8) 		13.1
(-1.5) 		30.2
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 21.2
(2.3)
A 		4.4
(-2.7)
A 		23.5
(3)
A 		3.5
(-3)
A 		11.9
(-0.5)
A 		8.4
(-1.5)
A 		20
B 27.1
(3)
A 		5.6
(-2.1)
A 		1.8
(-3)
A 		2.3
(-2.9)
A 		13.1
(-0.3)
A 		1.9
(-3)
A 		25
C 6.7
(-1.8)
A 		26.5
(3)
A 		9.7
(-1)
A 		16.9
(0.7)
A 		1.6
(-3)
A 		2.8
(-2.7)
A 		25
avr 18.3
(3) 		12.2
(0.4) 		11.7
(0.2) 		7.6
(-1.6) 		8.9
(-1.1) 		4.4
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.7
(-2.6)
A 		8.9
(3)
A 		1.2
(-3)
A 		6.9
(1.4)
A 		8
B 4.5
(0.5)
A 		1.1
(-3)
A 		6.9
(3)
A 		1.2
(-2.9)
A 		6
C 1.4
(-2.2)
A 		0.6
(-3)
A 		1.8
(-1.8)
A 		6.4
(3)
A 		6
avr 2.5
(-3) 		3.5
(-0.4) 		3.3
(-0.9) 		4.8
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 3.9
(1.3)
A 		1.6
(-2)
A 		5.1
(3)
A 		0.9
(-3)
A 		3.6
(0.9)
A 		2
(-1.4)
A 		4
B 9.4
(3)
A 		1.9
(-2)
A 		0.4
(-3)
A 		0.6
(-2.9)
A 		5.3
(0.3)
A 		0.7
(-2.8)
A 		9
C 2.5
(-1.4)
A 		8.1
(3)
A 		2.5
(-1.4)
A 		3.4
(-0.7)
A 		0.5
(-3)
A 		0.9
(-2.7)
A 		8
avr 5.3
(3) 		3.9
(1) 		2.7
(-0.8) 		1.6
(-2.4) 		3.1
(-0.2) 		1.2
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179549_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14209
Sequence Type Exemplar sequence
Representative Public ID C18D4.9 NCBI
Target Description C18D4.9 /REP_DB=WormBase Gene ID /WP=CE18511 /TR=Q9XVD7 /GB=CAB03906.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075038(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075038 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-90) (srz-90) mRNA, complete cds. 11/11 None
C18D4.9 ENSEMBL cdna:known chromosome:CEL140:V:17530605:17532418:1 gene:C18D4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17530604-17532418(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srz-90
Ensembl C18D4.9
Entrez Gene 182786 Entrez gene
SwissProt Q9XVD7 EMBL-EBI
WormBase CE18511 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03906 Hypothetical protein C18D4.9 [Caenorhabditis elegans] ref|NP_507439.1| Serpentine Receptor, class Z family member (srz-90) [Caenorhabditis elegans] 0.0
blast CAE18004 Hypothetical protein Y6G8.4 [Caenorhabditis elegans] ref|NP_001024283.1| Serpentine Receptor, class Z family member (srz-91) [Caenorhabditis elegans] 2.0E-85
blast CAB04829 Hypothetical protein T25E12.11 [Caenorhabditis elegans] ref|NP_507232.3| Serpentine Receptor, class Z family member (srz-100) [Caenorhabditis elegans] 1.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 7.6E-10
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 2.1E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507439.1 6 21-40,64-86,93-115,119-138,151-173,214-236
C18D4.9 6 21-40,64-86,93-115,119-138,151-173,214-236
Sequence
Target Sequence 
>C. ELEGANS:179549_AT
tagcagttgatcgtttcttggtcccctacaatatttggcacaccggaagagttttttact
tggtgagtactgtggaaagggtattccggctgagaatctcaaaaaaaacagctttgctaa
attctaccttacaggtagaatttttaattatgaatgtgctcatttcattattgtctccaa
taatctacattccaataatgatgaaaacacgggaaaaccgcatgtattcgcaacagcatg
cacatcttcacaactacgtcttttggcaaagtattctggtagtctcatcaaaaatggtaa
taaaaattagaccaaaactttgtcttgtaacattttgcttcaagatcgcactgccatata
taattagaaacaccaaaatccagcacattatatcgggaatttcaattaacgacggtttta
caacaccattgataattcagttgtcttatttgtggtgcaatcgacatattttattcaaaa
atttcaagttgaagacgtttgtaaaagttttatgtggcaagaccgatgctactgtgcacg
cta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGCAGTTGATCGTTTCTTGGTCCC 548 651 524 Antisense
GGTCCCCTACAATATTTGGCACACC 496 501 543 Antisense
GGGTATTCCGGCTGAGAATCTCAAA 433 497 602 Antisense
ACAGCTTTGCTAAATTCTACCTTAC 161 107 631 Antisense
GCTCATTTCATTATTGTCTCCAATA 426 301 681 Antisense
AAACCGCATGTATTCGCAACAGCAT 427 125 738 Antisense
GCAACAGCATGCACATCTTCACAAC 511 319 753 Antisense
TCTTCACAACTACGTCTTTTGGCAA 97 615 768 Antisense
GGCAAAGTATTCTGGTAGTCTCATC 390 535 788 Antisense
TTTGCTTCAAGATCGCACTGCCATA 266 667 857 Antisense
AAGACCGATGCTACTGTGCACGCTA 565 153 1042 Antisense
Sequence Source Affymetrix Proprietary Database