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[179548_at]

Description F08G2.8 /REP_DB=WormBase Gene ID /WP=CE19780 /TR=Q9XVA0 /GB=CAB04063.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 20      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_total > 34      4grp_total > 44      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 371.3
(3)
P 		276.5
(-1.2)
P 		235.3
(-3)
P 		246.5
(-2.5)
P 		136
B 294.1
(-1.1)
P 		372.7
(3)
P 		258.2
(-3)
P 		262.8
(-2.8)
P 		115
C 342.7
(1.3)
P 		413.7
(3)
P 		162.8
(-3)
P 		263.6
(-0.6)
P 		251
avr 336
(2.2) 		354.3
(3) 		218.8
(-3) 		257.6
(-1.3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 294
1 2 3 4 5 6 range
A 284.4
(2.8)
P 		269.4
(2.3)
P 		289.3
(3)
P 		168.8
(-1.2)
A 		116
(-3)
M 		235.4
(1.1)
P 		173
B 348.9
(1.5)
P 		305
(0.5)
P 		409.9
(3)
P 		227.7
(-1.4)
P 		161.7
(-3)
P 		169.7
(-2.8)
P 		248
C 346.6
(3)
P 		334.1
(2.5)
P 		290.5
(0.9)
P 		282.4
(0.6)
P 		185.1
(-3)
P 		189.1
(-2.9)
P 		162
avr 326.6
(2.9) 		302.8
(2.1) 		329.9
(3) 		226.3
(-0.5) 		154.3
(-3) 		198.1
(-1.5) 		176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 135.2
(3)
P 		60
(-1.6)
P 		61.5
(-1.5)
P 		36.1
(-3)
P 		99
B 93.8
(3)
P 		92
(2.7)
P 		59.8
(-2.4)
P 		56
(-3)
P 		38
C 113.4
(2.6)
P 		118.9
(3)
P 		56.8
(-2)
P 		44.4
(-3)
P 		75
avr 114.1
(3) 		90.3
(0.9) 		59.4
(-1.8) 		45.5
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 52.4
(-1.3)
P 		95.8
(3)
P 		63
(-0.2)
P 		42.8
(-2.2)
A 		35
(-3)
M 		57.3
(-0.8)
P 		61
B 121.4
(3)
P 		101.5
(1)
P 		99.5
(0.8)
P 		60.3
(-3)
P 		65.7
(-2.5)
P 		63.3
(-2.7)
P 		61
C 128.5
(3)
P 		101.9
(0.8)
P 		73.9
(-1.6)
P 		56.8
(-3)
P 		59.9
(-2.7)
P 		63.3
(-2.5)
P 		72
avr 100.8
(3) 		99.7
(2.9) 		78.8
(0.2) 		53.3
(-3) 		53.5
(-3) 		61.3
(-2) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179548_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2693
Sequence Type Exemplar sequence
Representative Public ID F08G2.8 NCBI
Target Description F08G2.8 /REP_DB=WormBase Gene ID /WP=CE19780 /TR=Q9XVA0 /GB=CAB04063.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064503(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064503 NCBI Caenorhabditis elegans F08G2.8 (F08G2.8) mRNA, complete cds. 11/11 None
GENEFINDER00000034728 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13852205:13855579:1 11/11 None
F08G2.8 ENSEMBL cdna:known chromosome:CEL140:II:13852205:13855123:1 gene:F08G2.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034717 2/11 Cross Hyb Matching Probes None
SNAP00000034719 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13852201-13855120(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08G2.8
Entrez Gene 184202 Entrez gene
SwissProt Q9XVA0 EMBL-EBI
WormBase CE19780 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04063 Hypothetical protein F08G2.8 [Caenorhabditis elegans] ref|NP_496904.1| F08G2.8 [Caenorhabditis elegans] 1.0E-135
blast CAB04063 Hypothetical protein F08G2.8 [Caenorhabditis elegans] ref|NP_496904.1| F08G2.8 [Caenorhabditis elegans] 1.0E-127
blast CAE73266 Hypothetical protein CBG20682 [Caenorhabditis briggsae] 1.0E-106
blast CAE73266 Hypothetical protein CBG20682 [Caenorhabditis briggsae] 2.0E-98
Sequence
Target Sequence 
>C. ELEGANS:179548_AT
gccaggcgctgggattagttcgacctctaagccaccaccggacccatttgcggatatgat
gaatgagcaaagtttggatgagaagctcgatgagttggatgtagagtcacaggagattgt
gattgactatgtgagacatggaaggaagttttatggagatctacgtagacgtttaatcct
ctacgtgatgaagttctcaccggtacaagcgatggttaaggagtctggcagtggatctca
aattcagaagatcgaaaaaatcaagtaccgctttcgatctgggctccggattaagtactc
ggcgttgaaatcgcgaatcgaccggctcgtcgcccacttgcttgccccgatcttcgcccc
attcatgcttctccaacctgaagagattcgccctctcttcgccgcccaacaaccccaaca
aaaagagcccgtgacagtgccgccacaagagatcactcagccacagagcagctttacagc
tctcgaaatattcccctcatatctgccacaggacaaatggccccagttcgatcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAGGCGCTGGGATTAGTTCGACC 356 281 111 Antisense
ACCACCGGACCCATTTGCGGATATG 99 37 144 Antisense
GAAGTTCTCACCGGTACAAGCGATG 494 337 300 Antisense
AATCAAGTACCGCTTTCGATCTGGG 508 171 369 Antisense
GATCTGGGCTCCGGATTAAGTACTC 161 417 386 Antisense
TTGAAATCGCGAATCGACCGGCTCG 265 703 415 Antisense
CATTCATGCTTCTCCAACCTGAAGA 571 215 470 Antisense
GTGACAGTGCCGCCACAAGAGATCA 500 481 541 Antisense
ATCACTCAGCCACAGAGCAGCTTTA 577 27 562 Antisense
GCTTTACAGCTCTCGAAATATTCCC 265 305 581 Antisense
GACAAATGGCCCCAGTTCGATCAGA 63 367 622 Antisense
Sequence Source Affymetrix Proprietary Database