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[179547_at]

Description ZK930.2 /REP_DB=WormBase Gene ID /WP=CE06672 /TR=Q23665 /GB=CAA94171.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 245
1 2 3 4 range
A 52.8
(-1.8)
A 		2.5
(-3)
A 		4.7
(-2.9)
A 		247.6
(3)
P 		245
B 32.2
(-2.6)
A 		20.8
(-3)
A 		33.9
(-2.5)
A 		187.2
(3)
P 		166
C 31.6
(-2.9)
A 		62.5
(-1.6)
A 		29.7
(-3)
A 		165.9
(3)
P 		136
avr 38.9
(-2.5) 		28.6
(-2.8) 		22.8
(-3) 		200.2
(3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 268
1 2 3 4 5 6 range
A 51.6
(-2.3)
A 		22.4
(-3)
A 		39.3
(-2.6)
A 		97.7
(-1.3)
P 		290.4
(3)
P 		274.9
(2.7)
P 		268
B 56.6
(-2.3)
A 		36.9
(-2.7)
A 		25.5
(-3)
A 		122.4
(-0.7)
P 		282.3
(3)
P 		234.8
(1.9)
P 		257
C 52.5
(-2.4)
A 		25.3
(-3)
A 		48.8
(-2.4)
A 		122.5
(-0.7)
P 		277.2
(3)
P 		243.4
(2.2)
P 		252
avr 53.6
(-2.4) 		28.2
(-3) 		37.9
(-2.8) 		114.2
(-1) 		283.3
(3) 		251
(2.2) 		255
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 19.2
(0.1)
A 		0.5
(-3)
A 		1.2
(-2.9)
A 		36.2
(3)
P 		36
B 10.3
(-2.1)
A 		5.1
(-3)
A 		7.8
(-2.5)
A 		39.9
(3)
P 		35
C 10.5
(-3)
A 		18
(-0.4)
A 		10.4
(-3)
A 		28
(3)
P 		18
avr 13.3
(-1.6) 		7.9
(-2.7) 		6.5
(-3) 		34.7
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 9.5
(-2.9)
A 		8
(-3)
A 		8.6
(-3)
A 		24.8
(-1.7)
P 		87.6
(3)
P 		66.9
(1.4)
P 		80
B 19.7
(-2.3)
A 		12.3
(-2.7)
A 		6.2
(-3)
A 		32.4
(-1.6)
P 		114.7
(3)
P 		87.6
(1.5)
P 		109
C 19.5
(-2.1)
A 		7.7
(-3)
A 		12.4
(-2.7)
A 		24.6
(-1.8)
P 		89.7
(3)
P 		81.5
(2.4)
P 		82
avr 16.2
(-2.5) 		9.3
(-3) 		9.1
(-3) 		27.3
(-1.8) 		97.3
(3) 		78.7
(1.7) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179547_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3995
Sequence Type Exemplar sequence
Representative Public ID ZK930.2 NCBI
Target Description ZK930.2 /REP_DB=WormBase Gene ID /WP=CE06672 /TR=Q23665 /GB=CAA94171.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064138(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064138 NCBI Caenorhabditis elegans ZK930.2 (ZK930.2) mRNA, complete cds. 11/11 None
SNAP00000000321 ENSEMBL cdna:SNAP chromosome:CEL140:II:11890949:11892712:-1 11/11 None
GENEFINDER00000000330 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11890949:11893296:-1 11/11 None
ZK930.2 ENSEMBL cdna:known chromosome:CEL140:II:11890949:11894607:-1 gene:ZK930.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11890945-11894604(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK930.2
Entrez Gene 191463 Entrez gene
SwissProt Q23665 EMBL-EBI
WormBase CE06672 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94171 Hypothetical protein ZK930.2 [Caenorhabditis elegans] ref|NP_496539.1| ZK930.2 [Caenorhabditis elegans] 1.0E-165
blast CAA94171 Hypothetical protein ZK930.2 [Caenorhabditis elegans] ref|NP_496539.1| ZK930.2 [Caenorhabditis elegans] 1.0E-126
blast CAE59390 Hypothetical protein CBG02748 [Caenorhabditis briggsae] 1.0E-105
blast CAA94171 Hypothetical protein ZK930.2 [Caenorhabditis elegans] ref|NP_496539.1| ZK930.2 [Caenorhabditis elegans] 1.0E-103
blast CAE59390 Hypothetical protein CBG02748 [Caenorhabditis briggsae] 4.0E-97
blast CAE59390 Hypothetical protein CBG02748 [Caenorhabditis briggsae] 6.0E-80
blast NP_955936 hypothetical protein LOC323487 [Danio rerio] gb|AAT68114.1| hepatocellular carcinoma-associated antigen 127-like [Danio rerio] gb|AAH53110.1| Unknown (protein for MGC:63849) [Danio rerio] 1.0E-20
blast NP_955936 hypothetical protein LOC323487 [Danio rerio] gb|AAT68114.1| hepatocellular carcinoma-associated antigen 127-like [Danio rerio] gb|AAH53110.1| Unknown (protein for MGC:63849) [Danio rerio] 1.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496539.1 1 12-34
ZK930.2 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:179547_AT
ggagccacgcggaagagctacggcagattaatcaggacattaatacgttggaggatatca
cgaaaagttcgaaaaccgagttggaaaaaaggaaaatgaagatttcggtggcaatgggag
aagtcgccagaatgagaggatttataaatgagaatctcgagtcgatgaatattattcaca
aattggagacttcggaagaagaggaattgtttaaagtgacttgtgccagacaaactacgg
atccaccaacaccctctgtgccacgtgtcccatccgatcttccagcatttcttcagactc
ttctcaacaatgcagcaatgcaacaaccatcgggaagtcaagttgacgttccacagaatt
tgataaatcgacatcggatgccaccgagttttgtggaggcgagcaagatgaaggtatgcg
aaaactgcggagcaaacatccaccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCCACGCGGAAGAGCTACGGCA 3 523 377 Antisense
GAAGAGCTACGGCAGATTAATCAGG 677 337 388 Antisense
GTGACTTGTGCCAGACAAACTACGG 150 483 592 Antisense
AGACAAACTACGGATCCACCAACAC 364 71 604 Antisense
CATTTCTTCAGACTCTTCTCAACAA 543 215 662 Antisense
GACTCTTCTCAACAATGCAGCAATG 575 373 672 Antisense
GCAGCAATGCAACAACCATCGGGAA 528 301 688 Antisense
AGTCAAGTTGACGTTCCACAGAATT 312 61 712 Antisense
AATCGACATCGGATGCCACCGAGTT 278 167 742 Antisense
GCCACCGAGTTTTGTGGAGGCGAGC 433 277 756 Antisense
AAACTGCGGAGCAAACATCCACCGA 581 127 798 Antisense
Sequence Source Affymetrix Proprietary Database