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[179546_at] 7TM receptor, srbc family

Description B0250.6 /REP_DB=WormBase Gene ID /WP=CE18482 /TR=Q9XVF5 /GB=CAB03794.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 27      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 18.6
(-1.4)
A 		8.4
(-3)
A 		14.4
(-2.1)
A 		46.8
(3)
A 		38
B 3.8
(-2.8)
A 		65.6
(3)
A 		1.2
(-3)
A 		27.5
(-0.5)
A 		64
C 17.3
(-3)
A 		38.9
(2)
A 		27.6
(-0.6)
A 		43.4
(3)
A 		26
avr 13.2
(-3) 		37.6
(2.6) 		14.4
(-2.7) 		39.2
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 39.9
(3)
A 		2
(-3)
A 		19.9
(-0.2)
A 		34
(2.1)
A 		30.8
(1.6)
A 		37.8
(2.7)
A 		38
B 35.8
(3)
A 		23.9
(0.9)
A 		23.7
(0.8)
A 		34.2
(2.7)
A 		26.3
(1.3)
A 		2.3
(-3)
A 		34
C 11.3
(-0.9)
A 		12.8
(-0.5)
A 		3.3
(-3)
A 		21.2
(1.8)
A 		13.6
(-0.2)
A 		25.7
(3)
A 		22
avr 29
(2.7) 		12.9
(-3) 		15.6
(-2) 		29.8
(3) 		23.6
(0.8) 		21.9
(0.2) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 6.8
(2.9)
A 		1.8
(-3)
A 		3.8
(-0.6)
A 		6.9
(3)
A 		5
B 1.2
(-2.7)
A 		16.2
(3)
A 		0.3
(-3)
A 		5.9
(-0.9)
A 		16
C 5.7
(-3)
A 		11.2
(3)
A 		9.6
(1.3)
A 		7.3
(-1.3)
A 		6
avr 4.6
(-3) 		9.7
(3) 		4.6
(-3) 		6.7
(-0.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7.4
(1.7)
A 		0.7
(-3)
A 		4.3
(-0.5)
A 		8.6
(2.5)
A 		9.3
(3)
A 		9.2
(2.9)
A 		9
B 12.5
(3)
A 		7.9
(0.6)
A 		5.8
(-0.5)
A 		9.1
(1.2)
A 		10.7
(2.1)
A 		0.9
(-3)
A 		12
C 4.2
(-0.4)
A 		3.9
(-0.6)
A 		0.8
(-3)
A 		4.3
(-0.3)
A 		4.4
(-0.2)
A 		8.6
(3)
A 		8
avr 8
(2.9) 		4.2
(-2.2) 		3.6
(-3) 		7.3
(1.9) 		8.1
(3) 		6.2
(0.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179546_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13952
Sequence Type Exemplar sequence
Representative Public ID B0250.6 NCBI
Target Description B0250.6 /REP_DB=WormBase Gene ID /WP=CE18482 /TR=Q9XVF5 /GB=CAB03794.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075541(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075541 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-79) (srbc-79) mRNA, complete cds. 11/11 None
B0250.6 ENSEMBL cdna:known chromosome:CEL140:V:20488822:20490536:-1 gene:B0250.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043593 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20488821-20490536(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srbc family
Gene Symbol srbc-79
Ensembl B0250.6
Entrez Gene 181883 Entrez gene
SwissProt Q9XVF5 EMBL-EBI
WormBase CE18482 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03794 Hypothetical protein B0250.6 [Caenorhabditis elegans] ref|NP_507942.1| Serpentine Receptor, class BC (class B-like) family member (srbc-79) [Caenorhabditis elegans] 1.0E-159
blast CAH04639 Hypothetical protein B0250.10 [Caenorhabditis elegans] ref|NP_001021344.1| Serpentine Receptor, class BC (class B-like) family member (srbc-78) [Caenorhabditis elegans] 1.0E-137
blast CAB05561 Hypothetical protein M01B2.3 [Caenorhabditis elegans] ref|NP_506775.1| Serpentine Receptor, class BC (class B-like) family member (srbc-75) [Caenorhabditis elegans] 3.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.8E-93
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507942.1 7 10-32,45-67,82-104,125-144,178-200,212-234,244-263
B0250.6 7 10-32,45-67,82-104,125-144,178-200,212-234,244-263
Sequence
Target Sequence 
>C. ELEGANS:179546_AT
tttacttgtatttccagctgcatcaattgggaatataagatcagtactaacatttttaat
agccctcgaaagagttattgccatatattttccaattttcttccacatttatcgacaaaa
acttccgaattttgtatttttactcataatcctatccagtgaacttttcaatcagtacat
gctttttggatattgtggaaatgttcttgaaacaccactagagtgtgtaaattacttttg
tgctgttaacagttgttactaccgctactggttttcacatcaacaaatagtttgcttttt
gaatggagctttctcggtcgttttatttcttcggcttactttttggagttatttctcggg
aactgaaacgaataaggatatttcgagagccacccgcatagctcttctcgactttttcat
aatgctattcttcaatatcattcctttgtacatctctagtcatattactggtgttaattt
ggagatattgggattgtttattgttcttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTACTTGTATTTCCAGCTGCATCA 633 673 258 Antisense
GTACTAACATTTTTAATAGCCCTCG 570 457 301 Antisense
GTATTTTTACTCATAATCCTATCCA 299 453 391 Antisense
CATAATCCTATCCAGTGAACTTTTC 632 213 402 Antisense
GAACTTTTCAATCAGTACATGCTTT 591 349 418 Antisense
CTACCGCTACTGGTTTTCACATCAA 617 225 516 Antisense
GAATGGAGCTTTCTCGGTCGTTTTA 587 329 558 Antisense
TCTCGGTCGTTTTATTTCTTCGGCT 114 589 569 Antisense
TATTTCTTCGGCTTACTTTTTGGAG 327 661 581 Antisense
CATTCCTTTGTACATCTCTAGTCAT 481 217 696 Antisense
TATTGGGATTGTTTATTGTTCTTAT 70 667 743 Antisense
Sequence Source Affymetrix Proprietary Database