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[179545_at]

Description C14A6.5 /REP_DB=WormBase Gene ID /WP=CE18496 /TR=Q9XVE3 /GB=CAB03879.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 13.6
(-1.1)
A 		33.2
(2.7)
A 		3.5
(-3)
A 		34.9
(3)
A 		31
B 5
(0.3)
A 		5.4
(3)
A 		4.5
(-3)
A 		5.4
(3)
A 		1
C 34.7
(3)
A 		10.8
(-1.5)
A 		2.7
(-3)
A 		3.2
(-2.9)
A 		32
avr 17.8
(3) 		16.5
(2.5) 		3.6
(-3) 		14.5
(1.6) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 7.1
(-2.1)
A 		7.3
(-2)
A 		2.8
(-3)
A 		4.1
(-2.7)
A 		7.8
(-1.9)
A 		30.1
(3)
A 		27
B 1.2
(-3)
A 		3.1
(-2.2)
A 		16
(3)
A 		3.9
(-1.9)
A 		13.3
(1.9)
A 		12.5
(1.6)
A 		15
C 4
(-3)
A 		4.2
(-3)
A 		29.3
(3)
A 		28.8
(2.9)
A 		15
(-0.4)
A 		10.9
(-1.4)
A 		25
avr 4.1
(-3) 		4.9
(-2.6) 		16
(2.2) 		12.3
(0.6) 		12
(0.5) 		17.8
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5
(0.9)
A 		7.2
(3)
A 		0.9
(-3)
A 		5.1
(1)
A 		6
B 1.6
(3)
A 		1.3
(0)
A 		1
(-3)
A 		1.2
(-1)
A 		1
C 11.5
(3)
A 		3.1
(-1.6)
A 		0.9
(-2.8)
A 		0.5
(-3)
A 		11
avr 6
(3) 		3.9
(0.5) 		0.9
(-3) 		2.3
(-1.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.3
(-2.4)
A 		2.6
(-1.2)
A 		0.6
(-3)
A 		1
(-2.6)
A 		2.3
(-1.5)
A 		7.3
(3)
A 		7
B 0.4
(-3)
A 		1
(-2.3)
A 		3.9
(1.2)
A 		1
(-2.3)
A 		5.4
(3)
A 		4.7
(2.2)
A 		5
C 1.5
(-2.8)
A 		1.3
(-3)
A 		7.5
(3)
A 		5.8
(1.4)
A 		4.9
(0.5)
A 		3.7
(-0.7)
A 		6
avr 1.1
(-3) 		1.6
(-2.3) 		4
(1.2) 		2.6
(-0.8) 		4.2
(1.5) 		5.2
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179545_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14153
Sequence Type Exemplar sequence
Representative Public ID C14A6.5 NCBI
Target Description C14A6.5 /REP_DB=WormBase Gene ID /WP=CE18496 /TR=Q9XVE3 /GB=CAB03879.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075147(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075147 NCBI Caenorhabditis elegans C14A6.5 (C14A6.5) mRNA, complete cds. 11/11 None
C14A6.5 ENSEMBL cdna:known chromosome:CEL140:V:18162259:18167402:-1 gene:C14A6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009395 8/11 Cross Hyb Matching Probes None
GENEFINDER00000009399 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18162258-18167402(-) 96.61 100.0
Public Domain and Genome References
Gene Title
Ensembl C14A6.5
Entrez Gene 182586 Entrez gene
SwissProt Q9XVE3 EMBL-EBI
WormBase CE18496 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03879 Hypothetical protein C14A6.5 [Caenorhabditis elegans] ref|NP_507548.1| C14A6.5 [Caenorhabditis elegans] 0.0
blast CAB04913 Hypothetical protein W04E12.4 [Caenorhabditis elegans] ref|NP_507827.2| W04E12.4 [Caenorhabditis elegans] 2.0E-35
blast CAB03878 Hypothetical protein C14A6.6 [Caenorhabditis elegans] ref|NP_507549.1| C14A6.6 [Caenorhabditis elegans] 5.0E-31
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507548.1 3 128-150,247-266,519-538
C14A6.5 3 128-150,247-266,519-538
Sequence
Target Sequence 
>C. ELEGANS:179545_AT
gaaaagaatggatatgtgccgggagagacagaaggcgacggtagaaaatctgaaaaatct
ggaaaaacttgtggagcaagacgagaatggaaatgcggaaatttccgcggaagatcaaga
gattctatcgatgctgaaattggatcaagtaagagactttgtgcaccagaacttctagaa
ctacgggaatattttcagaatgctcataaagcaattttgaatcttcgcaactcggatttt
gagggtcttgagccggaagttaaagacacaattatgtatttcagaaagattgaaatggaa
gacgaggtattcggaaaagagccggtggatgcttctgatagtgacgaagtaagtattgag
ggggaggagagaccgcagacaaacgtcaaaaacagcaccacttctgagcctgaaattgaa
gatgacaccgactcggacatcgaatctgaaattctcgagactgatgagatggatgacgtt
tccacttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAGAATGGATATGTGCCGGGAG 319 347 1051 Antisense
GGGAGAGACAGAAGGCGACGGTAGA 432 493 1071 Antisense
GTAAGAGACTTTGTGCACCAGAACT 624 455 1199 Antisense
GACTTTGTGCACCAGAACTTCTAGA 624 371 1205 Antisense
CACCAGAACTTCTAGAACTACGGGA 562 199 1214 Antisense
ACTCGGATTTTGAGGGTCTTGAGCC 640 97 1280 Antisense
GAGGTATTCGGAAAAGAGCCGGTGG 176 401 1354 Antisense
AGAGCCGGTGGATGCTTCTGATAGT 98 71 1368 Antisense
TTGAGGGGGAGGAGAGACCGCAGAC 617 649 1406 Antisense
GAGACCGCAGACAAACGTCAAAAAC 401 393 1419 Antisense
GAGATGGATGACGTTTCCACTTCTC 453 395 1516 Antisense
Sequence Source Affymetrix Proprietary Database