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[179544_at]

Description R148.2 /REP_DB=WormBase Gene ID /WP=CE12850 /TR=O17268 /GB=AAB71037.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 01      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 90      6grp_total > 08      4grp_total > 15      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 305.1
(2.7)
P 		222.9
(-3)
P 		256.3
(-0.7)
P 		308.9
(3)
P 		86
B 283.4
(0.6)
P 		184.3
(-2.4)
P 		163.4
(-3)
P 		364.5
(3)
P 		201
C 326.5
(3)
P 		214.3
(-3)
P 		219.9
(-2.7)
P 		280.4
(0.5)
P 		112
avr 305
(2.3) 		207.2
(-3) 		213.2
(-2.7) 		317.9
(3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 148.5
(-0)
P 		216.8
(3)
P 		214.3
(2.9)
P 		174.4
(1.1)
P 		80.2
(-3)
P 		106.7
(-1.8)
P 		137
B 203.4
(3)
P 		162.9
(-1)
P 		165.4
(-0.8)
P 		183.1
(1)
P 		142.7
(-3)
P 		151.7
(-2.1)
P 		61
C 322.4
(3)
P 		140
(-3)
P 		193.3
(-1.2)
P 		167.4
(-2.1)
P 		185.3
(-1.5)
P 		152.5
(-2.6)
P 		182
avr 224.8
(3) 		173.2
(-0.5) 		191
(0.7) 		175
(-0.4) 		136.1
(-3) 		137
(-2.9) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 111.1
(3)
P 		48.4
(-2.7)
P 		67
(-1)
P 		45.2
(-3)
P 		66
B 90.4
(3)
P 		45.5
(-2.1)
P 		37.9
(-3)
P 		77.7
(1.5)
P 		53
C 108.1
(3)
P 		61.6
(-1.6)
P 		76.7
(-0.1)
P 		47.3
(-3)
P 		61
avr 103.2
(3) 		51.8
(-3) 		60.5
(-2) 		56.7
(-2.4) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 27.4
(-2.6)
P 		77.1
(3)
P 		46.7
(-0.4)
P 		44.2
(-0.7)
P 		24.2
(-3)
P 		26
(-2.8)
P 		53
B 70.8
(3)
P 		54.2
(-0.3)
P 		40.2
(-3)
P 		48.5
(-1.4)
P 		58
(0.5)
P 		56.6
(0.2)
P 		31
C 119.5
(3)
P 		42.7
(-2.4)
P 		49.2
(-1.9)
P 		33.7
(-3)
P 		60
(-1.2)
P 		51.1
(-1.8)
P 		86
avr 72.6
(3) 		58
(0.1) 		45.4
(-2.4) 		42.1
(-3) 		47.4
(-2) 		44.6
(-2.5) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179544_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8079
Sequence Type Exemplar sequence
Representative Public ID R148.2 NCBI
Target Description R148.2 /REP_DB=WormBase Gene ID /WP=CE12850 /TR=O17268 /GB=AAB71037.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065267(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065267 NCBI Caenorhabditis elegans R148.2 (R148.2) mRNA, complete cds. 11/11 None
R148.2 ENSEMBL cdna:known chromosome:CEL140:III:3183682:3184991:1 gene:R148.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030365 7/11 Cross Hyb Matching Probes None
GENEFINDER00000030372 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3183681-3184991(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R148.2
Entrez Gene 187904 Entrez gene
SwissProt O17268 EMBL-EBI
WormBase CE12850 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71037 Hypothetical protein R148.2 [Caenorhabditis elegans] ref|NP_497668.1| R148.2 [Caenorhabditis elegans] 8.0E-68
Sequence
Target Sequence 
>C. ELEGANS:179544_AT
gcaaaacgtcacagcgatgatgtcaagcaccggagcatcgggaattacagtcgccgactc
ggaaggtgtcaggcttcattcggctggaaagattactgatatggcaaatgttggctcatt
gatgatcgccgatgcgaagaatatgttcccaaaaggtacaagaaataagaagaatagtta
tccaattgtcacattacactcatcggacggatcaaagactacgaaatttttgttcgaaaa
tctaaaaattttgaacgttttattcaaaaatcaacaaatttcatattatctgcttcaaaa
acctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAAACGTCACAGCGATGATGTCA 295 319 30 Antisense
TGATGTCAAGCACCGGAGCATCGGG 453 565 47 Antisense
GCATCGGGAATTACAGTCGCCGACT 395 297 64 Antisense
TCGCCGACTCGGAAGGTGTCAGGCT 138 599 80 Antisense
GTGTCAGGCTTCATTCGGCTGGAAA 681 485 95 Antisense
GTTGGCTCATTGATGATCGCCGATG 485 433 139 Antisense
GCCGATGCGAAGAATATGTTCCCAA 202 285 157 Antisense
GTTATCCAATTGTCACATTACACTC 171 447 206 Antisense
TCACATTACACTCATCGGACGGATC 206 627 218 Antisense
CGGACGGATCAAAGACTACGAAATT 304 1 233 Antisense
CATATTATCTGCTTCAAAAACCTGA 701 213 311 Antisense
Sequence Source Affymetrix Proprietary Database