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[179543_s_at]

Description ZK265.5 /REP_DB=WormBase Gene ID /WP=CE15297 /TR=Q94403 /GB=CAB03517.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 18      4grp_high_8_8 > 61      6grp_highest_nonorm > 75      6grp_total > 93      4grp_total > 59      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 906
1 2 3 4 range
A 985.3
(0.1)
P 		1001.4
(0.3)
P 		1398.2
(3)
P 		530
(-3)
P 		868
B 976.8
(0.6)
P 		1034.5
(1)
P 		1298
(3)
P 		491.9
(-3)
P 		806
C 861.8
(-0.4)
P 		1105.2
(1.3)
P 		1345.6
(3)
P 		496.2
(-3)
P 		849
avr 941.3
(0.1) 		1047
(0.9) 		1347.3
(3) 		506
(-3) 		841

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 261
1 2 3 4 5 6 range
A 795
(-2.2)
P 		854.8
(0.1)
P 		777.4
(-2.9)
P 		794.6
(-2.2)
P 		928.6
(3)
P 		773.9
(-3)
P 		155
B 832.9
(1.8)
P 		825.9
(1.6)
P 		667.5
(-3)
P 		868.5
(2.8)
P 		827.6
(1.6)
P 		876.2
(3)
P 		209
C 754.8
(-0.7)
P 		826.1
(1.8)
P 		860.2
(3)
P 		687.1
(-3)
P 		839.1
(2.3)
P 		828.6
(1.9)
P 		173
avr 794.2
(-1.4) 		835.6
(1.2) 		768.4
(-3) 		783.4
(-2.1) 		865.1
(3) 		826.2
(0.6) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 391
1 2 3 4 range
A 358.8
(2.9)
P 		217.4
(-0.1)
P 		365.5
(3)
P 		77.6
(-3)
P 		288
B 311.5
(3)
P 		255.5
(1.4)
P 		300.8
(2.7)
P 		104.8
(-3)
P 		207
C 285.3
(0.1)
P 		317.8
(0.6)
P 		469
(3)
P 		83.7
(-3)
P 		385
avr 318.5
(1.8) 		263.6
(0.6) 		378.4
(3) 		88.7
(-3) 		290

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 146.6
(-3)
P 		304
(3)
P 		169.3
(-2.1)
P 		201.5
(-0.9)
P 		280.2
(2.1)
P 		188.4
(-1.4)
P 		157
B 289.8
(1.4)
P 		274.9
(0.9)
P 		162.1
(-3)
P 		230
(-0.7)
P 		336.2
(3)
P 		326.7
(2.7)
P 		174
C 279.8
(3)
P 		252.1
(1.8)
P 		218.9
(0.4)
P 		138.2
(-3)
P 		271.5
(2.6)
P 		277.4
(2.9)
P 		142
avr 238.7
(-0.1) 		277
(2) 		183.4
(-3) 		189.9
(-2.7) 		296
(3) 		264.2
(1.3) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179543_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.501
Sequence Type Exemplar sequence
Representative Public ID ZK265.5 NCBI
Target Description ZK265.5 /REP_DB=WormBase Gene ID /WP=CE15297 /TR=Q94403 /GB=CAB03517.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026694(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026694 NCBI Caenorhabditis elegans ZK265.9 (ZK265.9) mRNA, complete cds. 11/11 None
GENEFINDER00000032262 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8261628:8263370:-1 11/11 None
SNAP00000032250 ENSEMBL cdna:SNAP chromosome:CEL140:I:8261763:8263045:-1 11/11 None
ZK265.9 ENSEMBL cdna:known chromosome:CEL140:I:8261659:8263045:-1 gene:ZK265.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8261693-8266995(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK265.9
Entrez Gene 3565961 Entrez gene
SwissProt Q5CZ37 EMBL-EBI
WormBase CE38132 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1640356_A_AT dm
DROSOPHILA_2:1625480_AT dm
DROSGENOME1:154541_AT dm
Protein Similarities
Method ID Description E-Value
blast CAI58649 Hypothetical protein ZK265.9 [Caenorhabditis elegans] ref|NP_001021865.1| ZK265.9 [Caenorhabditis elegans] 1.0E-155
blast CAI58649 Hypothetical protein ZK265.9 [Caenorhabditis elegans] ref|NP_001021865.1| ZK265.9 [Caenorhabditis elegans] 1.0E-153
blast CAE57068 Hypothetical protein CBG24962 [Caenorhabditis briggsae] 1.0E-136
blast XP_623896 PREDICTED: similar to CG10671-PA, isoform A [Apis mellifera] 1.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021865.1 4 46-64,79-101,219-241,251-273
ZK265.9 4 46-64,79-101,219-241,251-273
GENEFINDER00000032262 4 63-81,96-118,236-258,268-290
SNAP00000032250 4 46-64,79-101,219-241,251-273
Sequence
Target Sequence 
>C. ELEGANS:179543_S_AT
gacacttgtcatcgttggtccatttatttggttctcttcaaaagctcacaatcgtcgtga
tcgtgatcaaccaatcgttgatgtgtgccgtcttggagtgggaaccgcgtgttggtactt
ttctgtgcaatttttccacaaagttcttgcactaacctcaatgtgtgacaaaggacgtac
tctgactcgtgctcagtgttccgaaaaagaaggtgtctggacgccaggatatgatatttc
aggtcactgcttcttgatgatctacagtattctgattatcactgaggaggcgattgctta
ccgtcattatcaacaagtaactgatgcagttcatcaaatggacggtgatcgtgaagaaca
tgatcgtttgactcgatgcattcaatatttcttcgtcgcaatgttgttccttcatgcatt
ctggttcaagcaaattatcatctccgttctttattatcatatcttcattgaagagattct
cggagctgtggccgctgtcgtttgctggtttgtgacctaccgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACTTGTCATCGTTGGTCCATTT 75 367 1386 Antisense
TGTGTGCCGTCTTGGAGTGGGAACC 566 553 1467 Antisense
GAACCGCGTGTTGGTACTTTTCTGT 556 345 1487 Antisense
AAAGGACGTACTCTGACTCGTGCTC 466 121 1555 Antisense
AGGTCACTGCTTCTTGATGATCTAC 32 59 1626 Antisense
TGAGGAGGCGATTGCTTACCGTCAT 521 567 1668 Antisense
GATGCATTCAATATTTCTTCGTCGC 130 413 1760 Antisense
TTGTTCCTTCATGCATTCTGGTTCA 570 703 1789 Antisense
TTATCATCTCCGTTCTTTATTATCA 501 679 1820 Antisense
AAGAGATTCTCGGAGCTGTGGCCGC 261 155 1856 Antisense
TTTGCTGGTTTGTGACCTACCGCAT 239 665 1886 Antisense
Sequence Source Affymetrix Proprietary Database