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[179542_at]

Description W01D2.4 /REP_DB=WormBase Gene ID /WP=CE20127 /TR=Q9XU64 /GB=CAB05638.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 01      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 12.2
(0.4)
A 		3.9
(-3)
A 		3.8
(-3)
A 		18.6
(3)
A 		15
B 2.1
(-3)
A 		23.5
(-1.2)
A 		50
(1.1)
A 		72
(3)
P 		70
C 25.1
(-1.3)
A 		3.7
(-3)
A 		8.5
(-2.6)
A 		79
(3)
A 		75
avr 13.1
(-2.6) 		10.4
(-3) 		20.8
(-1.6) 		56.5
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 7.3
(-3)
A 		7.4
(-3)
A 		8.7
(-2.7)
A 		34.3
(3)
A 		20.2
(-0.1)
A 		9.1
(-2.6)
A 		27
B 38.7
(3)
A 		15.9
(-1.1)
A 		5.3
(-3)
A 		8.9
(-2.4)
A 		21.1
(-0.2)
A 		38.5
(3)
A 		33
C 8.8
(-1.8)
A 		12.1
(-0.9)
A 		15.8
(0.2)
A 		4.7
(-3)
A 		25.7
(3)
A 		18.3
(0.9)
A 		21
avr 18.3
(1.1) 		11.8
(-2.1) 		9.9
(-3) 		16
(-0) 		22.3
(3) 		22
(2.9) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.4
(3)
A 		0.8
(-3)
A 		1
(-2.7)
A 		2.7
(0.2)
A 		4
B 0.7
(-3)
A 		5.8
(-0.9)
A 		11.6
(1.5)
A 		15.3
(3)
P 		15
C 8.3
(0.5)
A 		1.1
(-3)
A 		3
(-2.1)
A 		13.3
(3)
A 		12
avr 4.5
(-1.5) 		2.6
(-3) 		5.2
(-1) 		10.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.3
(-3)
A 		2.6
(-1.9)
A 		1.9
(-2.5)
A 		8.7
(3)
A 		6.1
(0.9)
A 		2.2
(-2.3)
A 		7
B 13.5
(2.6)
A 		5.3
(-1.2)
A 		1.3
(-3)
A 		2.3
(-2.5)
A 		8.6
(0.3)
A 		14.4
(3)
A 		13
C 3.3
(-1.1)
A 		3.7
(-0.8)
A 		4
(-0.5)
A 		1
(-3)
A 		8.3
(3)
A 		6.1
(1.2)
A 		7
avr 6
(1.1) 		3.9
(-1.3) 		2.4
(-3) 		4
(-1.2) 		7.7
(3) 		7.6
(2.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179542_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3014
Sequence Type Exemplar sequence
Representative Public ID W01D2.4 NCBI
Target Description W01D2.4 /REP_DB=WormBase Gene ID /WP=CE20127 /TR=Q9XU64 /GB=CAB05638.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064669(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064669 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-11) (srt-11) mRNA, complete cds. 11/11 None
W01D2.4 ENSEMBL cdna:known chromosome:CEL140:II:14805876:14807977:1 gene:W01D2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015968 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14805887-14807974(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srt-11
Ensembl W01D2.4
Entrez Gene 189093 Entrez gene
SwissProt Q9XU64 EMBL-EBI
WormBase CE37852 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05638 Hypothetical protein W01D2.4 [Caenorhabditis elegans] ref|NP_497070.2| Serpentine Receptor, class T family member (srt-11) [Caenorhabditis elegans] 1.0E-176
blast CAE58309 Hypothetical protein CBG01419 [Caenorhabditis briggsae] 1.0E-125
blast CAE58308 Hypothetical protein CBG01418 [Caenorhabditis briggsae] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497070.2 7 39-61,68-90,110-132,153-175,203-225,246-268,273-295
W01D2.4 7 39-61,68-90,110-132,153-175,203-225,246-268,273-295
Sequence
Target Sequence 
>C. ELEGANS:179542_AT
acaccatatacgctttctttttcacaaaagcccttgtgttttctgctgaagcaagctgtt
ggttttttgatccgatgattgggaaagatgcaagtctataccatagctatccacattcta
taaataacttcgccgttgggatatgcacaataattttgtatttgtatttatcgtatcgat
taattttcaaatttggctactctacatctatgtggttatataaaactaagagacagataa
tatttcaagccatctccctctgcattttccatgctaccgctgcttttatctacgagtata
tgcaatttttcgctccgaccccgttgctaattattattagccaattcgtttggcaatgga
gtagtggtgctatttgcctggcatatttggtattcaatagaacaattcgcaatttagtcg
tcaaaatgatattgccgaaaaagatacgattgaaatatggtctttatattggagtcgacg
aacatattgcatttgagggagctgttgggaatactggtgctgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACCATATACGCTTTCTTTTTCAC 74 109 485 Antisense
ACAAAAGCCCTTGTGTTTTCTGCTG 498 111 508 Antisense
AGCAAGCTGTTGGTTTTTTGATCCG 548 75 534 Antisense
GTCTATACCATAGCTATCCACATTC 516 469 578 Antisense
ATAACTTCGCCGTTGGGATATGCAC 24 25 608 Antisense
ATTTGGCTACTCTACATCTATGTGG 103 19 675 Antisense
GATAATATTTCAAGCCATCTCCCTC 136 423 720 Antisense
CTACCGCTGCTTTTATCTACGAGTA 639 225 758 Antisense
GTATATGCAATTTTTCGCTCCGACC 500 453 780 Antisense
GTAGTGGTGCTATTTGCCTGGCATA 708 455 845 Antisense
GCTGTTGGGAATACTGGTGCTGCTG 500 295 985 Antisense
Sequence Source Affymetrix Proprietary Database