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[179541_s_at]

Description K10G4.4 /REP_DB=WormBase Gene ID /WP=CE16247 /TR=O45675 /GB=CAB07259.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 53      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 53.1
(3)
P 		38.8
(-0.8)
A 		39.4
(-0.6)
A 		30.3
(-3)
A 		23
B 63
(2.2)
P 		71.8
(3)
A 		50.2
(1)
M 		7.5
(-3)
A 		64
C 86.6
(3)
P 		48.4
(-0.9)
A 		49.3
(-0.8)
A 		27.4
(-3)
A 		59
avr 67.6
(3) 		53
(1.1) 		46.3
(0.2) 		21.7
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 36.9
(1)
A 		47.3
(2.3)
A 		28.5
(-0.1)
A 		52.3
(3)
A 		44.3
(1.9)
A 		6.8
(-3)
A 		46
B 30.5
(0.2)
A 		31.8
(0.4)
A 		54.2
(3)
A 		4.5
(-2.8)
A 		3
(-3)
A 		28.4
(-0)
A 		51
C 41.1
(0.8)
A 		30.9
(-1.5)
A 		41.9
(1)
A 		50.6
(3)
A 		44.1
(1.5)
A 		24.3
(-3)
A 		26
avr 36.2
(1.5) 		36.7
(1.7) 		41.5
(3) 		35.8
(1.4) 		30.5
(-0) 		19.8
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 19.3
(3)
P 		8.4
(-1.4)
A 		10.3
(-0.6)
A 		4.4
(-3)
A 		15
B 20.1
(3)
P 		17.7
(2.2)
A 		11.6
(0.2)
M 		1.6
(-3)
A 		19
C 28.7
(3)
P 		13.9
(-0.7)
A 		17.2
(0.1)
A 		4.6
(-3)
A 		24
avr 22.7
(3) 		13.3
(0.1) 		13
(-0) 		3.5
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 6.8
(-1)
A 		16.8
(3)
A 		6.2
(-1.2)
A 		13.3
(1.6)
A 		13.4
(1.6)
A 		1.7
(-3)
A 		15
B 10.6
(1.7)
A 		10.6
(1.7)
A 		13.2
(3)
A 		1.2
(-3)
A 		1.2
(-3)
A 		10.6
(1.7)
A 		12
C 15.2
(3)
A 		9.4
(-1.9)
A 		10.7
(-0.8)
A 		10.2
(-1.2)
A 		14.3
(2.2)
A 		8.1
(-3)
A 		7
avr 10.9
(1.5) 		12.3
(3) 		10
(0.5) 		8.2
(-1.5) 		9.6
(0.1) 		6.8
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179541_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13033
Sequence Type Exemplar sequence
Representative Public ID K10G4.4 NCBI
Target Description K10G4.4 /REP_DB=WormBase Gene ID /WP=CE16247 /TR=O45675 /GB=CAB07259.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074977(11), NM_064484(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074977 NCBI Caenorhabditis elegans K10G4.4 (K10G4.4) mRNA, complete cds. 11/11 A 
NM_064484 NCBI Caenorhabditis elegans C01B9.1 (C01B9.1) mRNA, complete cds. 11/11 A 
SNAP00000033538 ENSEMBL cdna:SNAP chromosome:CEL140:II:13773772:13777588:1 11/11 None
GENEFINDER00000033542 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13772469:13779599:1 11/11 None
SNAP00000034109 ENSEMBL cdna:SNAP chromosome:CEL140:V:17281301:17287506:-1 10/11 None
C01B9.1 ENSEMBL cdna:known chromosome:CEL140:II:13771472:13778912:1 gene:C01B9.1 11/11 A 
K10G4.4 ENSEMBL cdna:known chromosome:CEL140:V:17284955:17287746:-1 gene:K10G4.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027358 6/11 Cross Hyb Matching Probes None
GENEFINDER00000027364 6/11 Cross Hyb Matching Probes None
GENEFINDER00000034118 6/11 Cross Hyb Matching Probes None
K03D7.3 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17284954-17287746(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl C01B9.1
K10G4.4
Entrez Gene 175023 Entrez gene
187279 Entrez gene
SwissProt O45231 EMBL-EBI
O45675 EMBL-EBI
WormBase CE17359 Wormbase
CE16247 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07259 Hypothetical protein K10G4.4 [Caenorhabditis elegans] ref|NP_507378.1| K10G4.4 [Caenorhabditis elegans] 0.0
blast CAB07551 Hypothetical protein C01B9.1 [Caenorhabditis elegans] ref|NP_496885.1| C01B9.1 [Caenorhabditis elegans] 0.0
blast CAB04646 Hypothetical protein R10E8.6 [Caenorhabditis elegans] ref|NP_507572.1| R10E8.6 [Caenorhabditis elegans] 0.0
blast CAB07258 Hypothetical protein K10G4.1 [Caenorhabditis elegans] ref|NP_507377.1| K10G4.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.1E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.8E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.7E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.9E-5
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-14
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.1E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.2E-17
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.8E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.7E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.0E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.8E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.7E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.0E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-14
Pfam IPR000698 EMBL-EBI Arrestin 2.3E-5
Sequence
Target Sequence 
>C. ELEGANS:179541_S_AT
ttggaccaccagctcacgaagagtatgcaagtgcagagcaatgtgatcgaatttggtgca
ttccgatttcaaattctgacaattgtcaccccatctcccaaccgatttcaaatactctca
aatactcgatttcaaatacactcgtcaagaaaatagaagcgtcgaaaaactggtctctca
aagttaaaatagacgagggtcaggttcagatcaacttcactcactcatccgtgccgacca
aaaccatctgctataaaaatcacagagaaggatgtctgttggagtatgaatttcacaaag
tagtgtttgacgaggactttgtcactgcatcctgtgatgatctgaacttcgtaatgaata
gtgtgcaagagtttgacaagtttgtaattgaatctggtgagatctcagcgccaaatcgag
aagatgatccaaataactcaaatgaaacaattctaccatattggttgaataatctcgaga
cacatttaaagcaaagatcacagatgcttattgtcggaacttttaagctgaacttgaaaa
atcacgctccaaacaatcggttcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGACCACCAGCTCACGAAGAGTA 466 707 1592 Antisense
GACCACCAGCTCACGAAGAGTATGC 482 383 1595 Antisense
TGCAAGTGCAGAGCAATGTGATCGA 427 575 1617 Antisense
AGGTTCAGATCAACTTCACTCACTC 642 57 1793 Antisense
GAAGGATGTCTGTTGGAGTATGAAT 592 333 1858 Antisense
GCATCCTGTGATGATCTGAACTTCG 428 309 1918 Antisense
GAACTTCGTAATGAATAGTGTGCAA 480 349 1935 Antisense
AGTGTGCAAGAGTTTGACAAGTTTG 498 39 1951 Antisense
GTCGGAACTTTTAAGCTGAACTTGA 129 471 2104 Antisense
GAAAAATCACGCTCCAAACAATCGG 153 355 2127 Antisense
TCACGCTCCAAACAATCGGTTCTTT 264 625 2133 Antisense
Sequence Source Affymetrix Proprietary Database