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[179539_at]

Description ZK287.1 /REP_DB=WormBase Gene ID /WP=CE06610 /TR=Q23460 /GB=CAA94805.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 03      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 41      6grp_total > 24      4grp_total > 45      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 926
1 2 3 4 range
A 1029.8
(2.8)
P 		1049.5
(3)
P 		498.9
(-1.5)
P 		312
(-3)
P 		738
B 1203.8
(3)
P 		895.7
(0.9)
P 		463.5
(-2.1)
P 		331.5
(-3)
P 		872
C 1235.4
(3)
P 		912.3
(0.9)
P 		606.2
(-1.1)
P 		309.3
(-3)
P 		926
avr 1156.3
(3) 		952.5
(1.5) 		522.9
(-1.5) 		317.6
(-3) 		839

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 965
1 2 3 4 5 6 range
A 1233.1
(3)
P 		1019.3
(1.7)
P 		843.1
(0.5)
P 		555.6
(-1.3)
P 		375.5
(-2.4)
P 		279.1
(-3)
P 		954
B 1244
(3)
P 		1055.7
(1.7)
P 		864.2
(0.4)
P 		559.5
(-1.6)
P 		356.4
(-3)
P 		366.3
(-2.9)
P 		888
C 953.4
(1.9)
P 		1074
(3)
P 		645
(-0.8)
P 		668.7
(-0.6)
P 		403.1
(-2.9)
P 		390.6
(-3)
P 		683
avr 1143.5
(3) 		1049.7
(2.3) 		784.1
(0.3) 		594.6
(-1.1) 		378.3
(-2.8) 		345.3
(-3) 		798
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 363
1 2 3 4 range
A 375
(3)
P 		227.8
(0.3)
P 		130.4
(-1.5)
P 		45.7
(-3)
P 		329
B 383.9
(3)
P 		221.2
(-0.1)
P 		107.4
(-2.3)
P 		70.6
(-3)
P 		313
C 409
(3)
P 		262.3
(0.5)
P 		211.3
(-0.3)
P 		52.2
(-3)
P 		357
avr 389.3
(3) 		237.1
(0.3) 		149.7
(-1.3) 		56.2
(-3) 		333

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 365
1 2 3 4 5 6 range
A 227.3
(0.2)
P 		362.5
(3)
P 		183.6
(-0.6)
P 		140.9
(-1.5)
P 		113.3
(-2.1)
P 		67.9
(-3)
P 		295
B 432.9
(3)
P 		351.4
(1.3)
P 		209.8
(-1.5)
P 		148.2
(-2.8)
P 		144.8
(-2.8)
P 		136.6
(-3)
P 		296
C 353.4
(3)
P 		327.7
(2.3)
P 		164.2
(-2.1)
P 		134.5
(-2.9)
P 		130.4
(-3)
P 		130.7
(-3)
P 		223
avr 337.9
(2.8) 		347.2
(3) 		185.9
(-1.1) 		141.2
(-2.2) 		129.5
(-2.5) 		111.7
(-3) 		236
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179539_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11350
Sequence Type Exemplar sequence
Representative Public ID ZK287.1 NCBI
Target Description ZK287.1 /REP_DB=WormBase Gene ID /WP=CE06610 /TR=Q23460 /GB=CAA94805.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073091(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073091 NCBI Caenorhabditis elegans ZK287.1 (ZK287.1) mRNA, complete cds. 11/11 None
SNAP00000034520 ENSEMBL cdna:SNAP chromosome:CEL140:V:9669520:9672465:1 11/11 None
GENEFINDER00000034531 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9669520:9672465:1 11/11 None
ZK287.1.1 ENSEMBL cdna:known chromosome:CEL140:V:9669283:9672627:1 gene:ZK287.1 11/11 None
ZK287.1.2 ENSEMBL cdna:known chromosome:CEL140:V:9669284:9672627:1 gene:ZK287.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9669519-9672465(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK287.1
Entrez Gene 179356 Entrez gene
SwissProt Q23460 EMBL-EBI
WormBase CE06610 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94805 Hypothetical protein ZK287.1 [Caenorhabditis elegans] ref|NP_505492.1| ZK287.1 [Caenorhabditis elegans] 0.0
blast CAE72223 Hypothetical protein CBG19334 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179539_AT
ggattggagtccgcatgttgatcataagggagactatcttcaactttggaataatcatca
cttagataaggccgtagcacaatcgcaacttttcatcaacgaatgccgccgtgccctcgg
tctttcaatgaaattctgggttgccgaaattcatgaaatagtcaaagacacaattctaca
tttctccgatcttcgtaccaaatgtggggatcttaacgatgcactcaaacaactagatct
gactgcaactcctcacaagattcgttcaacaccttcaaaacgcagaagtttcattgatct
tcacgaacttcgagacaaattattgagatcgtcgtcgtcggacggtggaaagaaagcagg
gtctcatgtgtcagtagccagtgaggatgctcaagctcaagcaatggttgcttctttctg
tggacgttcattcgatgattgtgagactgatgaaatcgctcaaagaatccgtcgtgcaac
tgctaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTGGAGTCCGCATGTTGATCAT 637 507 960 Antisense
TAAGGCCGTAGCACAATCGCAACTT 680 635 1026 Antisense
TTTTCATCAACGAATGCCGCCGTGC 592 675 1049 Antisense
AGACACAATTCTACATTTCTCCGAT 646 71 1125 Antisense
CTCCGATCTTCGTACCAAATGTGGG 251 235 1143 Antisense
CAACTAGATCTGACTGCAACTCCTC 466 187 1189 Antisense
GCAACTCCTCACAAGATTCGTTCAA 617 319 1204 Antisense
AGATCGTCGTCGTCGGACGGTGGAA 295 65 1285 Antisense
AGCAGGGTCTCATGTGTCAGTAGCC 295 77 1314 Antisense
CTTCTTTCTGTGGACGTTCATTCGA 399 221 1370 Antisense
AAGAATCCGTCGTGCAACTGCTAAC 638 149 1422 Antisense
Sequence Source Affymetrix Proprietary Database