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[179538_at]

Description ZK262.9 /REP_DB=WormBase Gene ID /WP=CE19326 /TR=Q9XTR4 /GB=CAB16550.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 46.4
(-3)
P 		58
(-0.9)
A 		51.6
(-2.1)
A 		80.1
(3)
A 		34
B 24.3
(-3)
A 		72.7
(1.6)
M 		87
(3)
M 		48
(-0.7)
A 		63
C 43.9
(-3)
P 		59.3
(2.3)
P 		52.3
(-0.1)
P 		61.4
(3)
A 		18
avr 38.2
(-3) 		63.3
(2.9) 		63.6
(3) 		63.2
(2.9) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 27
(-3)
A 		41.9
(1.5)
P 		35.8
(-0.3)
A 		43.7
(2)
A 		39.4
(0.7)
A 		46.9
(3)
A 		20
B 33.6
(-2.2)
A 		39.2
(-0.5)
P 		50.4
(3)
A 		36.7
(-1.3)
A 		41.3
(0.2)
A 		31.1
(-3)
A 		19
C 37.7
(-3)
A 		48.4
(0.8)
A 		45.4
(-0.2)
A 		54.4
(3)
A 		40.9
(-1.9)
A 		37.9
(-2.9)
A 		17
avr 32.8
(-3) 		43.2
(2.2) 		43.9
(2.5) 		44.9
(3) 		40.5
(0.8) 		38.6
(-0.1) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 16.9
(3)
P 		12.6
(-2)
A 		13.5
(-0.9)
A 		11.7
(-3)
A 		5
B 7.8
(-3)
A 		18
(1.9)
M 		20.2
(3)
M 		10.2
(-1.8)
A 		12
C 14.5
(0.2)
P 		17
(2.1)
P 		18.2
(3)
P 		10.4
(-3)
A 		8
avr 13.1
(-0.9) 		15.9
(1.7) 		17.3
(3) 		10.8
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5
(-3)
A 		14.9
(3)
P 		7.8
(-1.3)
A 		11.1
(0.7)
A 		11.9
(1.2)
A 		11.4
(0.9)
A 		10
B 11.7
(-1.3)
A 		13
(-0.2)
P 		12.2
(-0.9)
A 		9.7
(-3)
A 		16.8
(3)
A 		11.6
(-1.4)
A 		7
C 14
(1.8)
A 		14.8
(3)
A 		11.6
(-1.9)
A 		10.9
(-3)
A 		13.2
(0.5)
A 		12.7
(-0.2)
A 		4
avr 10.2
(-3) 		14.2
(3) 		10.5
(-2.6) 		10.6
(-2.4) 		14
(2.7) 		11.9
(-0.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179538_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12866
Sequence Type Exemplar sequence
Representative Public ID ZK262.9 NCBI
Target Description ZK262.9 /REP_DB=WormBase Gene ID /WP=CE19326 /TR=Q9XTR4 /GB=CAB16550.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075209(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075209 NCBI Caenorhabditis elegans ZK262.9 (ZK262.9) mRNA, complete cds. 11/11 None
ZK262.9 ENSEMBL cdna:known chromosome:CEL140:V:18443152:18443914:1 gene:ZK262.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl ZK262.9
Entrez Gene 191271 Entrez gene
SwissProt Q9XTR4 EMBL-EBI
WormBase CE19326 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16550 Hypothetical protein ZK262.9 [Caenorhabditis elegans] ref|NP_507610.1| ZK262.9 [Caenorhabditis elegans] 1.0E-105
blast CAB16473 Hypothetical protein Y43F4A.3 [Caenorhabditis elegans] ref|NP_499727.1| Y43F4A.3 [Caenorhabditis elegans] 3.0E-14
blast AAF60392 Hypothetical protein W09B7.1 [Caenorhabditis elegans] gb|AAK84505.1| Hypothetical protein F07B7.1 [Caenorhabditis elegans] ref|NP_505271.1| W09B7.1 [Caenorhabditis elegans] ref|NP_505285.1| F07B7.1 [Caenorhabditis elegans] 3.0E-14
Sequence
Target Sequence 
>C. ELEGANS:179538_AT
gaaaccggttcaatcatccgcgaaagtcccgacaatgggcagattttgcatcttctgcaa
aaccaccacccacgaatccatcgaatgcaattctcacaaggaatcgactcaacgcgtgag
gtgtgcaagaagaaatggatattgcgatttgtgcttgttgtcgtacgtgatttcggagga
tggacaccacaagggctgcacgggactcaatgtcacctgcaagtactgcctggcacgccc
cgatttcgcctacgatgccgagcacaatgaagtcttctgcgcagtgcgtttcaagaacac
gcaaaaaggaaagaaggatggagcaaacagcacccgcggttcagctgaacccgcagcccc
ggagcaaccgcacaagaagaggagaaagagaaaggcgacaagggatgacaaggtgggttt
aagttttattccggggaaaaaagaacatgttgagagagagagtgaggaaaaagagaacga
gcttcataaattagacgttcctttacaggaggagagtgctcaatccacctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACCGGTTCAATCATCCGCGAAA 125 359 108 Antisense
CATCCGCGAAAGTCCCGACAATGGG 550 197 122 Antisense
CCACCCACGAATCCATCGAATGCAA 47 275 173 Antisense
GATTTGTGCTTGTTGTCGTACGTGA 693 425 253 Antisense
AGGATGGACACCACAAGGGCTGCAC 517 55 284 Antisense
CTGCACGGGACTCAATGTCACCTGC 78 239 303 Antisense
CAATGTCACCTGCAAGTACTGCCTG 339 183 315 Antisense
GATGCCGAGCACAATGAAGTCTTCT 190 415 361 Antisense
GAAGTCTTCTGCGCAGTGCGTTTCA 265 337 376 Antisense
GAAGGATGGAGCAAACAGCACCCGC 138 335 420 Antisense
GGAGGAGAGTGCTCAATCCACCTCC 82 517 615 Antisense
Sequence Source Affymetrix Proprietary Database