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[179536_at]

Description T16A9.3 /REP_DB=WormBase Gene ID /WP=CE13724 /TR=Q22522 /GB=CAB00877.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 25      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 60.8
(-3)
A 		101
(-0.3)
A 		84.3
(-1.5)
A 		151.8
(3)
A 		91
B 77
(-1.6)
A 		124.9
(3)
A 		114
(2)
A 		62.3
(-3)
A 		63
C 85
(-3)
A 		111.4
(-0.7)
A 		109.8
(-0.8)
A 		153.1
(3)
A 		68
avr 74.3
(-3) 		112.4
(1.8) 		102.7
(0.5) 		122.4
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 90.9
(-1.5)
A 		149.7
(3)
A 		101.9
(-0.7)
A 		71.2
(-3)
A 		71.7
(-3)
A 		86.2
(-1.9)
A 		79
B 79.1
(-0.3)
A 		104.1
(3)
A 		58.5
(-3)
A 		64.8
(-2.2)
A 		92.1
(1.4)
A 		82.6
(0.2)
A 		46
C 99.1
(-2.9)
A 		150.3
(3)
A 		116.5
(-0.9)
A 		101.3
(-2.7)
A 		98.5
(-3)
A 		114.3
(-1.2)
A 		52
avr 89.7
(-1.9) 		134.7
(3) 		92.3
(-1.6) 		79.1
(-3) 		87.4
(-2.1) 		94.4
(-1.3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 22.1
(1)
A 		21.9
(-3)
A 		22
(-1)
A 		22.2
(3)
A 		0
B 24.6
(0.9)
A 		30.8
(3)
A 		26.4
(1.5)
A 		13.3
(-3)
A 		18
C 28.1
(-1.9)
A 		32
(-0)
A 		38.3
(3)
A 		25.8
(-3)
A 		13
avr 24.9
(0.2) 		28.2
(2.5) 		28.9
(3) 		20.4
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 16.8
(-3)
A 		53.2
(3)
A 		22.2
(-2.1)
A 		18.1
(-2.8)
A 		21.6
(-2.2)
A 		21
(-2.3)
A 		36
B 27.5
(0.4)
A 		34.7
(2.3)
A 		14.2
(-3)
A 		17.2
(-2.2)
A 		37.4
(3)
A 		30.8
(1.3)
A 		23
C 36.7
(0.8)
A 		45.9
(3)
A 		29.7
(-0.8)
A 		20.4
(-3)
A 		31.9
(-0.3)
A 		38.2
(1.2)
A 		26
avr 27
(-1.1) 		44.6
(3) 		22
(-2.2) 		18.6
(-3) 		30.3
(-0.3) 		30
(-0.4) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179536_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13041
Sequence Type Exemplar sequence
Representative Public ID T16A9.3 NCBI
Target Description T16A9.3 /REP_DB=WormBase Gene ID /WP=CE13724 /TR=Q22522 /GB=CAB00877.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074116(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074116 NCBI Caenorhabditis elegans T16A9.3 (T16A9.3) mRNA, complete cds. 9/11 None
SNAP00000032388 ENSEMBL cdna:SNAP chromosome:CEL140:V:14208875:14211574:1 9/11 None
GENEFINDER00000032392 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14210298:14211574:1 9/11 None
T16A9.3 ENSEMBL cdna:known chromosome:CEL140:V:14210298:14211574:1 gene:T16A9.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14210297-14211480(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16A9.3
Entrez Gene 188549 Entrez gene
SwissProt Q22522 EMBL-EBI
WormBase CE37991 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00877 Hypothetical protein T16A9.3 [Caenorhabditis elegans] ref|NP_506517.2| T16A9.3 [Caenorhabditis elegans] 0.0
blast CAA94574 Hypothetical protein C25G4.8 [Caenorhabditis elegans] ref|NP_502382.1| C25G4.8 [Caenorhabditis elegans] 1.0E-114
blast CAA94574 Hypothetical protein C25G4.8 [Caenorhabditis elegans] ref|NP_502382.1| C25G4.8 [Caenorhabditis elegans] 1.0E-111
blast CAE60487 Hypothetical protein CBG04101 [Caenorhabditis briggsae] 6.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR009676 EMBL-EBI Protein of unknown function DUF1265 7.4E-32
Pfam IPR009676 EMBL-EBI Protein of unknown function DUF1265 7.4E-32
Sequence
Target Sequence 
>C. ELEGANS:179536_AT
cgatgcactcactgataaatcccgccacaatttgatgctaaaaacatccgacggcgtcca
ttctttgatgaccagtaaggaactcgtgtgcctggcatctccattcttccgtgatacttt
gaaggacacaacaactgagtacacagttgaagatgcagattctgtggaggccatcgatat
ttttctcacctatatggtcaccggacgctacaaaaaaccagctctgctcactccaaaact
ggcttccgaggtgttcactttggccaagcaatgggaggttttcaagatgaaacttctgaa
gaactcgattgaaaaacatctgtgtgaagagctaaagacgaactatgaagagctcatgta
catttgcaacttgctcatcctcgccgaagatgcaaagtttcagaatgttaaaaactgctg
tgttgccactctggtcttctaccattttcaagactttatgagaattatggttaatgaggt
tagttggacttgcagcgttcgacacctgccgggtacttgtccactattactaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATGCACTCACTGATAAATCCCGC 459 249 357 Antisense
AAACATCCGACGGCGTCCATTCTTT 314 127 398 Antisense
GTAAGGAACTCGTGTGCCTGGCATC 660 459 431 Antisense
TCTCCATTCTTCCGTGATACTTTGA 688 609 454 Antisense
TCTCACCTATATGGTCACCGGACGC 342 611 540 Antisense
GGCTTCCGAGGTGTTCACTTTGGCC 67 537 597 Antisense
TTGCTCATCCTCGCCGAAGATGCAA 681 703 727 Antisense
TAAAAACTGCTGTGTTGCCACTCTG 75 641 765 Antisense
CACTCTGGTCTTCTACCATTTTCAA 31 197 783 Antisense
TAGTTGGACTTGCAGCGTTCGACAC 244 651 837 Antisense
CGGGTACTTGTCCACTATTACTAGA 34 243 866 Antisense
Sequence Source Affymetrix Proprietary Database